Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1m5wa_ | Pyridoxine 5'-phosphate synthase | Pyridoxine 5'-phosphate synthase | TIM beta/alpha-barrel | α/β |
| Hit | d1h1na_ | Endocellulase EngI | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 1.875 --> IntermediateDALI alignment (Z-score: 11.1 Raw score:1066.10) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCFA------------TWSVFDLM 48 :::::::::::: :::::::: d1m5wa_ 1 ---------------------------aELLLGVNIDHIAtlrnargtaypdPVQAAFIA 33 query 49 RD-YMDGTTSSS--------LFEVRLGRERFGKETHAYSVaYGDNEIDEVVSH-ADKIIF 98 :: ::::::::: :::::::::::::::::::: :::::::::::: :::::: d1m5wa_ 34 EQaGADGITVHLredrrhitDRDVRILRQTLDTRMNLEMA-VTEEMLAIAVETkPHFCCL 92 query 99 N-----------------sISQLERFADKAA--GIARGLRLNPqrlgewDVPKVERVMD- 138 : :::::::::::: :::::::::: :::::::::: d1m5wa_ 93 VpekrqevtteggldvagqRDKMRDACKRLAdaGIQVSLFIDA------DEEQIKAAAEv 146 query 139 RINGFMIHNNceNKDFG--LFDRMLGEIEERFGALIARVDWVSLGGGIHFtgddypvdaF 196 :::::::::: ::::: ::::::::::::::::::::::::::::::: : d1m5wa_ 147 GAPFIEIHTGcyADAKTdaEQAQELARIAKAATFAASLGLKVNAGHGLTY--------hN 198 query 197 SARLRAFSdrygVQIYLEPGEASITKSTtlevtvldtlynknlaivdssieahmldlliy 256 :::::::: :::::::::::::::: d1m5wa_ 199 VKAIAAIP----EMHELNIGHAIIGRAV-------------------------------- 222 query 257 retakvlpnegshsymicgksclagdvfgefrfaeelkvgdrisfQDAAgytmvkknwfn 316 :::: d1m5wa_ 223 ---------------------------------------------MTGL----------- 226 query 317 gvkmpaiaireldgsvrtvreftyadyeqsls 348 d1m5wa_ 227 ----------------kdavaemkrlmlearg 242 FAST alignment (Normalized score: 6.41 Raw score:1859.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALKCFA--------------TWSVF 45 :::::::::: ::::: d1m5wa_ 1 ----------------------------AELLLGVNIDH--IATLRNARGTAYPDPVQAA 30 query 46 DLMR-DYMDGTTS--------SSLFEVRLGRERFGKETHAYSVAYGDNEIDEVVS-HADK 95 :::: :::::::: ::::::::::::::::::::: :::::::::::: :::: d1m5wa_ 31 FIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEM-AVTEEMLAIAVETKPHF 89 query 96 IIFN------------------SISQLERFADKA---AGIARGLRLNPQRLGEW----DV 130 ::: ::::::::::: :::::::::: :: d1m5wa_ 90 CCL-VPEKRQEVTTEGGLDVAGQRDKMRDACKR-LADAGIQVSLFID-------ADEEQI 140 query 131 PKVERVMD-RINGFMI--HNNCENKDFGLFDRMLGEIEERFGALIARV--DWVSLGGGIH 185 ::::: ::::::: :::::::::::::::::::::::::::: ::::::::: d1m5wa_ 141 KAAAE---VGAPFIEIHTGCYADAKTDAEQAQELARIAKAATFAAS--LGLKVNAGHGL- 194 query 186 FTGDDYPVDA---FSARLRAFSDRYGVQ----IYLEPGEASITKSTTLEVTVLDTLYNKN 238 ::::::: ::::::::: d1m5wa_ 195 ----------TYHNVKAIAA--------IPEMHELNIGHAI------------------- 217 query 239 LAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDR 298 d1m5wa_ 218 ------------------------------------------------------------ 218 query 299 ISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS---------- 348 d1m5wa_ 218 --------------------------------------------------IGRAVMTGLK 227 query 349 --------------- 349 d1m5wa_ 228 DAVAEMKRLMLEARG 242 TMalign alignment (TM-score: 0.43 Raw score:150.40) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFA------------TWSVFDLM 48 ::::::::::::: :::::::: d1m5wa_ 1 ---------------------------AELLLGVNIDHIATLRNARGTAYPDPVQAAFIA 33 query 49 RD-YMDGTTSSS-------LF-EVRLGRERFGKETHAYSVAYGDNEIDEVV-SHADKIIF 98 :: ::::::::: :: :::::::::::::::::::: :::::::: :::::::: d1m5wa_ 34 EQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVT-EEMLAIAVETKPHFCCL 92 query 99 -------------NSI--S--QLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDR 139 ::: : :::::::::: :::::::::: :::::::::::: d1m5wa_ 93 VPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDA-----DEEQIKAAAEVG 147 query 140 INGFMIHNNCENKD--FG-LFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAF 196 :::::::::::::: : ::::::::::::::::::::::::::::::: ::: : d1m5wa_ 148 APFIEIHTGCYADAKT-DAEQAQELARIAKAATFAASLGLKVNAGHGLTY----HNV--K 200 query 197 SARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIY 256 : ::: :: : ::::::::::::::: d1m5wa_ 201 A-IAA-IP--E--MHELNIGHAIIGRAV-------------------------------- 222 query 257 RETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAG---------- 306 :::: d1m5wa_ 223 ----------------------------------------------MTGLKDAVAEMKRL 236 query 307 ------YTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1m5wa_ 237 MLEARG------------------------------------------ 242 HHsearch alignment (Probability: 0.05 E-value:0.11) query 110 KAAGIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNNCENKDFGLF-----DRMLGEI 164 :::::::::::::: ::::::::::::::::::::::::::::: ::::::: d1m5wa_ 123 ADAGIQVSLFIDAD-----EEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKA 177 query 165 EERFGALIARVDWVSLGGGI 184 ::::::::::: :::::: d1m5wa_ 178 ATFAASLGLKV---NAGHGL 194
Intermediate <-- 1.333 --> HitDALI alignment (Z-score: 12.8 Raw score:1345.10) d1m5wa_ 1 --AELLLGVNIDH------iatlrNARGtaypDPVQAAFIAEQAGADGITVHLREDR--- 49 ::::::::::: :::: ::::::::::::::::::::::::: d1h1na_ 1 akVFQWFGSNESGaefgsqnlpgvEGKD-yiwPDPNTIDTLISKGMNIFRVPFMMERlvp 59 d1m5wa_ 50 -------rhiTDRDVRILRQTL---DTRMNLEMA---------------vTEEMLAIAVE 84 :::::::::::: ::::::::: :::::::::: d1h1na_ 60 nsmtgspdpnYLADLIATVNAItqkGAYAVVDPHnygryynsiisspsdfETFWKTVASQ 119 d1m5wa_ 85 TK---PHFCCLVpekrqevtteGGLD--vAGQR-DKMRDACKRLAD---AGIQVSLF--- 132 :: ::::::: :::: :::: :::::::::::: :::::::: d1h1na_ 120 FAsnpLVIFDTD----------NEYHdmdQTLVlNLNQAAIDGIRSagaTSQYIFVEgns 169 d1m5wa_ 133 -IDAD--EEQIKAAAEVG----aPFIEIHTGcyADAK------tdAEQAQELARIAKAAT 179 :::: ::::::::::: :::::::: :::: ::::::::::::::: d1h1na_ 170 wTGAWtwTNVNDNMKSLTdpsdkIIYEMHQY--LDSDgsgtsatcVSSTIGQERITSATQ 227 d1m5wa_ 180 FAASLGLKVNAGHGLT----------yhnVKAIAAIP-EMHELNIGH---------AIIG 219 :::::::::::::::: :::::::: ::::::::: :::: d1h1na_ 228 WLRANGKKGIIGEFAGgadnvcetaitgmLDYMAQNTdVWTGAIWWAagpwwgdyiFSME 287 d1m5wa_ 220 rAVMTGlkDAVAEMKRLMlearg 242 ::::: :::::::::: d1h1na_ 288 -PDNGIayQQILPILTPY----- 304 FAST alignment (Normalized score: 7.32 Raw score:1985.00) d1m5wa_ 1 AE----LLLGVNIDHIATL-----RNARGTAYPD------------PVQAAFIAEQAGAD 39 ::::::: :::: :::::::::::::: d1h1na_ 1 --AKVFQWFGSNE------SGAEFGSQN------LPGVEGKDYIWPDPNTIDTLISKGMN 46 d1m5wa_ 40 GITVHLREDRRHI---------------TDRDVRILRQT---LDTRMNL--EMAV----- 74 :::::::: ::::::::::: ::::::: :::: d1h1na_ 47 IFRVPFMM-----ERLVPNSMTGSPDPNYLADLIATVNAITQKGAYAVVDPHNYGRYYNS 101 d1m5wa_ 75 ----TEEMLAIAVETKP----------HFCCLVPEKRQEVTTEGGLDVAG---------- 110 :::::::::: :::: d1h1na_ 102 IISSPSDFETFWKT---VASQFASNPLVIFD-------------------TDNEYHDMDQ 139 d1m5wa_ 111 --QRDKMRDACKRLAD---AGIQVSLFIDA--------DEEQIKAAAEVGA------PFI 151 :::::::::::::: ::::::::: ::::::::::: ::: d1h1na_ 140 TLVLNLNQAAIDGIRSAGATSQYIFVEG--NSWTGAWTWTNVNDNMKSL--TDPSDKIIY 195 d1m5wa_ 152 EIHTGCYADAKTDA--------------EQAQELARIAKAATFAASLGLKVNAGHGL--- 194 :::: :::::::::::::::::::::::::: d1h1na_ 196 EMHQ----------YLDSDGSGTSATCVSSTIGQERITSATQWLRANGKKGIIG---EFA 242 d1m5wa_ 195 ------TYHNVKAIAA------IPEMHELNIGHAIIGRAVMTGL---------------- 226 ::::::::: :::::::: d1h1na_ 243 GGADNVCETAITGML-DYMAQNTDVWTGAI--------------WWAAGPWWGDYIFSME 287 d1m5wa_ 227 ---KDAVAEMKRLMLEARG-- 242 :::::::::::: d1h1na_ 288 PDNGIAYQQILPILT----PY 304 TMalign alignment (TM-score: 0.72 Raw score:173.62) d1m5wa_ 1 -AEL-LLGVNIDHIATL------RNARGTAYPDPVQAAFIAEQAGADGITVHLREDRR-- 50 ::: :::::::::::: ::::::: ::::::::::::::::::::::::::: d1h1na_ 1 AKVFQWFGSNESGAEFGSQNLPGVEGKDYI-WPDPNTIDTLISKGMNIFRVPFMMERLVP 59 d1m5wa_ 51 ---------HITDRDVRILRQTL--D-TRMNLEM-A-V------------T-EEMLAIAV 83 ::::::::::::: : ::::::: : : : :::::::: d1h1na_ 60 NSMTGSPDP-NYLADLIATVNAITQKGAYAVVDPHNYGRYYNSIISSPSDFETFWKTVAS 118 d1m5wa_ 84 ETK---PHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLA--DAG-IQVSLF----I 133 ::: :::::::: :::::::::::::::::::::: ::: :::::: : d1h1na_ 119 QFASNPLVIFDTDN-------EYHDMDQTLVLNLNQAAIDGIRSAGATSQYIFVEGNSWT 171 d1m5wa_ 134 DA--DEEQIKAAAEVGA----PFIEIHTG----CYADA-KTDAEQAQELARIAKAATFAA 182 :: ::::::::::::: :::::::: ::::: :::: :::::::::::::::: d1h1na_ 172 GAWTWTNVNDNMKSLTDPSDKIIYEMHQYLDSDGSGTSATCVS-STIGQERITSATQWLR 230 d1m5wa_ 183 SLGLKVNAGHGLT-Y----H-NVKAIAAIP--E---MHELNIGHAI--I--G--RAVMTG 225 ::::::::::::: : : ::::::::: : :::::::::: : : :::::: d1h1na_ 231 ANGKKGIIGEFAGGADNVCETAITGMLDYMAQNTDVWTGAIWWAAGPWWGDYIFSMEPDN 290 d1m5wa_ 226 LKDAVAEMKRLMLEARG 242 :::: ::::::::: : d1h1na_ 291 GIAY-QQILPILTP-Y- 304 HHsearch alignment (Probability: 0.57 E-value:0.00) d1m5wa_ 24 PDPVQAAFIAEQAGADGITVHL-----RE--DRRHITDRDVRILRQTLD------TRMNL 70 ::::::::: :::::::::::: :: :::::::::::::::::: ::::: d1h1na_ 32 PDPNTIDTL-ISKGMNIFRVPFMMERLVPNSMTGSPDPNYLADLIATVNAITQKGAYAVV 90 d1m5wa_ 71 EMA-----------VTEEM----LAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKM 115 ::: ::::: ::::::::::: :::::::::: :::::::::::: d1h1na_ 91 DPHNYGRYYNSIISSPSDFETFWKTVASQFASNP-LVIFDTDNEY---HDMDQTLVLNLN 146 d1m5wa_ 116 RDACKRLADAGI-QVSLFIDADEEQ-------IKAAAEV---GAPFI--EIH-------T 155 :::::::::::: :::::::::::: ::::::: ::::: ::: : d1h1na_ 147 QAAIDGIRSAGATSQYIFVEGNSWTGAWTWTNVNDNMKSLTDPSDKIIYEMHQYLDSDGS 206 d1m5wa_ 156 GCYADAKTDAEQAQELARIAKAATFAASLGLKVNAG 191 :::::::::: ::::::::::::::::::::::: d1h1na_ 207 GTSATCVSST---IGQERITSATQWLRANGKKGIIG 239