Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1m5wa_ | Pyridoxine 5'-phosphate synthase | Pyridoxine 5'-phosphate synthase | TIM beta/alpha-barrel | α/β |
| Hit | d1qnra_ | Beta-mannanase | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 1.875 --> IntermediateDALI alignment (Z-score: 11.1 Raw score:1066.10) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCFA------------TWSVFDLM 48 :::::::::::: :::::::: d1m5wa_ 1 ---------------------------aELLLGVNIDHIAtlrnargtaypdPVQAAFIA 33 query 49 RD-YMDGTTSSS--------LFEVRLGRERFGKETHAYSVaYGDNEIDEVVSH-ADKIIF 98 :: ::::::::: :::::::::::::::::::: :::::::::::: :::::: d1m5wa_ 34 EQaGADGITVHLredrrhitDRDVRILRQTLDTRMNLEMA-VTEEMLAIAVETkPHFCCL 92 query 99 N-----------------sISQLERFADKAA--GIARGLRLNPqrlgewDVPKVERVMD- 138 : :::::::::::: :::::::::: :::::::::: d1m5wa_ 93 VpekrqevtteggldvagqRDKMRDACKRLAdaGIQVSLFIDA------DEEQIKAAAEv 146 query 139 RINGFMIHNNceNKDFG--LFDRMLGEIEERFGALIARVDWVSLGGGIHFtgddypvdaF 196 :::::::::: ::::: ::::::::::::::::::::::::::::::: : d1m5wa_ 147 GAPFIEIHTGcyADAKTdaEQAQELARIAKAATFAASLGLKVNAGHGLTY--------hN 198 query 197 SARLRAFSdrygVQIYLEPGEASITKSTtlevtvldtlynknlaivdssieahmldlliy 256 :::::::: :::::::::::::::: d1m5wa_ 199 VKAIAAIP----EMHELNIGHAIIGRAV-------------------------------- 222 query 257 retakvlpnegshsymicgksclagdvfgefrfaeelkvgdrisfQDAAgytmvkknwfn 316 :::: d1m5wa_ 223 ---------------------------------------------MTGL----------- 226 query 317 gvkmpaiaireldgsvrtvreftyadyeqsls 348 d1m5wa_ 227 ----------------kdavaemkrlmlearg 242 FAST alignment (Normalized score: 6.41 Raw score:1859.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALKCFA--------------TWSVF 45 :::::::::: ::::: d1m5wa_ 1 ----------------------------AELLLGVNIDH--IATLRNARGTAYPDPVQAA 30 query 46 DLMR-DYMDGTTS--------SSLFEVRLGRERFGKETHAYSVAYGDNEIDEVVS-HADK 95 :::: :::::::: ::::::::::::::::::::: :::::::::::: :::: d1m5wa_ 31 FIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEM-AVTEEMLAIAVETKPHF 89 query 96 IIFN------------------SISQLERFADKA---AGIARGLRLNPQRLGEW----DV 130 ::: ::::::::::: :::::::::: :: d1m5wa_ 90 CCL-VPEKRQEVTTEGGLDVAGQRDKMRDACKR-LADAGIQVSLFID-------ADEEQI 140 query 131 PKVERVMD-RINGFMI--HNNCENKDFGLFDRMLGEIEERFGALIARV--DWVSLGGGIH 185 ::::: ::::::: :::::::::::::::::::::::::::: ::::::::: d1m5wa_ 141 KAAAE---VGAPFIEIHTGCYADAKTDAEQAQELARIAKAATFAAS--LGLKVNAGHGL- 194 query 186 FTGDDYPVDA---FSARLRAFSDRYGVQ----IYLEPGEASITKSTTLEVTVLDTLYNKN 238 ::::::: ::::::::: d1m5wa_ 195 ----------TYHNVKAIAA--------IPEMHELNIGHAI------------------- 217 query 239 LAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDR 298 d1m5wa_ 218 ------------------------------------------------------------ 218 query 299 ISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS---------- 348 d1m5wa_ 218 --------------------------------------------------IGRAVMTGLK 227 query 349 --------------- 349 d1m5wa_ 228 DAVAEMKRLMLEARG 242 TMalign alignment (TM-score: 0.43 Raw score:150.40) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFA------------TWSVFDLM 48 ::::::::::::: :::::::: d1m5wa_ 1 ---------------------------AELLLGVNIDHIATLRNARGTAYPDPVQAAFIA 33 query 49 RD-YMDGTTSSS-------LF-EVRLGRERFGKETHAYSVAYGDNEIDEVV-SHADKIIF 98 :: ::::::::: :: :::::::::::::::::::: :::::::: :::::::: d1m5wa_ 34 EQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVT-EEMLAIAVETKPHFCCL 92 query 99 -------------NSI--S--QLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDR 139 ::: : :::::::::: :::::::::: :::::::::::: d1m5wa_ 93 VPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDA-----DEEQIKAAAEVG 147 query 140 INGFMIHNNCENKD--FG-LFDRMLGEIEERFGALIARVDWVSLGGGIHFTGDDYPVDAF 196 :::::::::::::: : ::::::::::::::::::::::::::::::: ::: : d1m5wa_ 148 APFIEIHTGCYADAKT-DAEQAQELARIAKAATFAASLGLKVNAGHGLTY----HNV--K 200 query 197 SARLRAFSDRYGVQIYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIY 256 : ::: :: : ::::::::::::::: d1m5wa_ 201 A-IAA-IP--E--MHELNIGHAIIGRAV-------------------------------- 222 query 257 RETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAG---------- 306 :::: d1m5wa_ 223 ----------------------------------------------MTGLKDAVAEMKRL 236 query 307 ------YTMVKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1m5wa_ 237 MLEARG------------------------------------------ 242 HHsearch alignment (Probability: 0.05 E-value:0.11) query 110 KAAGIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNNCENKDFGLF-----DRMLGEI 164 :::::::::::::: ::::::::::::::::::::::::::::: ::::::: d1m5wa_ 123 ADAGIQVSLFIDAD-----EEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKA 177 query 165 EERFGALIARVDWVSLGGGI 184 ::::::::::: :::::: d1m5wa_ 178 ATFAASLGLKV---NAGHGL 194
Intermediate <-- 1.367 --> HitDALI alignment (Z-score: 13.8 Raw score:1490.10) d1m5wa_ 1 -----------------aELLLGVNIDHIATlrnargtAYPDPVQAAFIAEQAGADGITV 43 ::::::::::::: :::::::::::::::::::::: d1qnra_ 1 assfvtisgtqfnidgkvGYFAGTNCYWCSF-----ltNHADVDSTFSHISSSGLKVVRV 55 d1m5wa_ 44 HLRED-----------------------rrhiTDRDVRILRQTL---DTRMNLEMA---- 73 ::::: :::::::::::: ::::::::: d1qnra_ 56 WGFNDvntqpspgqiwfqklsatgstintgadGLQTLDYVVQSAeqhNLKLIIPFVnnws 115 d1m5wa_ 74 ---------------------------vTEEMLA-IAVETK----PHFCCLVPekrqevt 101 :::::: :::::: :::::::: d1qnra_ 116 dygginayvnafggnattwytntaaqtqYRKYVQaVVSRYAnstaIFAWELGN------- 168 d1m5wa_ 102 tegGLDV-----AGQRDKMRDACKRLADA--GIQVSLFIDADE---------------EQ 139 :::: ::::::::::::::::: :::::::::::: :: d1qnra_ 169 ---EPRCngcstDVIVQWATSVSQYVKSLdsNHLVTLGDEGLGlstgdgaypytygegTD 225 d1m5wa_ 140 IKAAAEV-GAPFIEIHTGCyaDAKTdaEQAQELARIAKAATFAASLGLKVNAGHGL---- 194 ::::::: ::::::::::: :::: ::::::::::::::::::::::::::::: d1qnra_ 226 FAKNVQIkSLDFGTFHLYP-dSWGT--NYTWGNGWIQTHAAACLAAGKPCVFEEYGaqqn 282 d1m5wa_ 195 ----tYHNVKAIAAIPEMHELNIgHAII--------------GRAVMTglkDAVAEMKRL 236 :::::::::::::::::: :::: :::::: ::::::::: d1qnra_ 283 pctneAPWQTTSLTTRGMGGDMF-WQWGdtfangaqsnsdpyTVWYNS---SNWQCLVKN 338 d1m5wa_ 237 MLEARG 242 :::::: d1qnra_ 339 HVDAIN 344 FAST alignment (Normalized score: 8.37 Raw score:2414.00) d1m5wa_ 1 -----------------AELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITV 43 :::::::::::::: ::::: ::::::::::::::::::: d1qnra_ 1 ASSFVTISGTQFNIDGKVGYFAGTNCYWCSF----LTNHA-DVDSTFSHISSSGLKVVRV 55 d1m5wa_ 44 HLREDRRHI----------------------------------TDRDVRILRQTLDTRMN 69 :: :::::::::: :::::: d1qnra_ 56 WG-------FNDVNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQ-HNLKLI 107 d1m5wa_ 70 LEMAV-------------------------------TEEMLAIAVETK----------PH 88 :: :::::::::: :: d1qnra_ 108 IP---FVNNWSDYGGINAYVNAFGGNATTWYTNTAAQTQYRKYVQA--VVSRYANSTAIF 162 d1m5wa_ 89 FCCLVPEKRQEVTTEGGLDVAG--------------QRDKMRDACKRLAD--AGIQVSLF 132 ::: :::::::::::::: :::::::: d1qnra_ 163 AWE-------------------LGNEPRCNGCSTDVIVQWATSVSQYVKSLDSNHLVTLG 203 d1m5wa_ 133 IDA-------------------DEEQIKAAAE--VGAPFIEIHTGCY--ADAKTDA-EQA 168 ::: ::::: :::::::::: :::: ::: d1qnra_ 204 DEGLGLSTGDGAYPYTYGEGTDFAKNV-----QIKSLDFGTFHL---YPDSWG---TNYT 252 d1m5wa_ 169 QELARIAKAATFAASLGLKVNAGHGL-----------TYHNVKAIAAIPEMHELNIGHAI 217 ::::::::::::::::::::::: :::::::::::::::::: d1qnra_ 253 WGNGWIQTHAAACLAAGKPCVFE---EYGAQQNPCTNEAPWQTTSLTTRGMGGDM----- 304 d1m5wa_ 218 IGRAVMTGL------------------------KDAVAEMKRLMLEARG- 242 ::::::::::::::: d1qnra_ 305 ---------FWQWGDTFANGAQSNSDPYTVWYNSSNWQCLVKNHVDAI-N 344 TMalign alignment (TM-score: 0.73 Raw score:176.46) d1m5wa_ 1 ----------A-------ELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITV 43 : ::::::::::::: : ::::::::::::::::::::::: d1qnra_ 1 ASSFVTISGTQFNIDGKVGYFAGTNCYWCSF-L----TNHADVDSTFSHISSSGLKVVRV 55 d1m5wa_ 44 HLREDR--------RHI---------------TDRDVRILRQTL---DTRMNLEMA---- 73 :::::: ::: :::::::::::: ::::::::: d1qnra_ 56 WGFNDVNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNWS 115 d1m5wa_ 74 -------------------------V--TEEMLA-IAVETK----PHFCCLVPEKRQEVT 101 : :::::: :::::: :::::::: d1qnra_ 116 DYGGINAYVNAFGGNATTWYTNTAAQTQYRKYVQAVVSRYANSTAIFAWELGN------- 168 d1m5wa_ 102 TEGGLD----VAGQRDKMRDACKRLAD-A-GIQVSLFI-DADE---------------EQ 139 :::: ::::::::::::::::: : :::::::: :::: :: d1qnra_ 169 --EPRCNGCSTDVIVQWATSVSQYVKSLDSNHLVTLGDEGLGLSTGDGAYPYTYGEGTDF 226 d1m5wa_ 140 IKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIAKAATFAASLGLKVNAGHGLT---Y 196 ::::::::::::::::: :::::: :::::::::::::::::::::::::::::: : d1qnra_ 227 AKNVQIKSLDFGTFHLY-PDSWGT--NYTWGNGWIQTHAAACLAAGKPCVFEEYGAQQNP 283 d1m5wa_ 197 H-NVKAIA-AI--P-EMHELNIGHAII--------------GRAVMTGLKDAVAEMKRLM 237 : :::::: :: : ::::::::: :: :::: :: :::::::::: d1qnra_ 284 CTNEAPWQTTSLTTRGMGGDMFWQ-WGDTFANGAQSNSDPYTVWY-NS--SNWQCLVKNH 339 d1m5wa_ 238 LEARG 242 ::::: d1qnra_ 340 VDAIN 344 HHsearch alignment (Probability: 0.24 E-value:0.01) d1m5wa_ 21 TAYPDPVQAAFIAEQAGADGITVHL--------REDRRHIT------------------D 54 ::::::::::::::::::::::::: :::::::: : d1qnra_ 33 TNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLSATGSTINTGADGLQTL 92 d1m5wa_ 55 RDVRILRQTLDTRMNLEMAV------------------------TE--------EMLAIA 82 :::::::::::::::::::: :: :::::: d1qnra_ 93 DYVVQSAEQHNLKLIIPFVNNWSDYGGINAYVNAFGGNATTWYTNTAAQTQYRKYVQAVV 152 d1m5wa_ 83 VETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFID 134 :::::::::::::::::::::::: ::::::::::::::::::::::::::: d1qnra_ 153 SRYANSTAIFAWELGNEPRCNGCS-TDVIVQWATSVSQYVKSLDSNHLVTLG 203