Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1hkva2 | Diaminopimelate decarboxylase LysA | PLP-binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1aq0a_ | Plant beta-glucanases | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 2.023 --> IntermediateDALI alignment (Z-score: 19.0 Raw score:1797.70) query 1 mietpyyliDKAKLTRNMERIAHVREksgaKALLALKCFATWSVFDLMRDYMDGTTSSSL 60 ::::::::::::::::: :::::::::::::::::::::::::::::: d1hkva2 1 ---------DEDDFRSRCRETAAAFG-sgaNVHYAAKAFLCSEVARWISEEGLCLDVCTG 50 query 61 FEVRLGRERFGK--ETHAYSVAYGDNEIDEVV-SHADKIIFNSISQLERFADKA----AG 113 :::::::::::: :::::::::::::::::: ::::::::::::::::::::: :: d1hkva2 51 GELAVALHASFPpeRITLHGNNKSVSELTAAVkAGVGHIVVDSMTEIERLDAIAgeagIV 110 query 114 IARGLRLNPQ----------------RLGEW----DVPKVERVMD-----RINGFMIHNN 148 :::::::::: ::::: :::::::::: :::::::::: d1hkva2 111 QDVLVRLTVGveahthefistahedqKFGLSvasgAAMAAVRRVFatdhlRLVGLHSHIG 170 query 149 CENKDFGLFDRMLGEIEERFGAL--------iaRVDWVSLGGGIH----ftgDDYPVDAF 196 ::::::::::::::::::::::: :::::::::::: :::::::: d1hkva2 171 SQIFDVDGFELAAHRVIGLLRDVvgefgpektaQIATVDLGGGLGisylpsdDPPPIAEL 230 query 197 SARLRAFSDR-------YGVQIYLEPGEASITKSTtlevtvldtlynknlaivdssieah 249 :::::::::: :::::::::::::::::: d1hkva2 231 AAKLGTIVSDestavglPTPKLVVEPGRAIAGPGT------------------------- 265 query 250 mldlliyretakvlpnegshsymicgksclagdvfgefrfaeelkvgdrisfqdaagytm 309 d1hkva2 266 ------------------------------------------------------------ 266 query 310 vkknwfngvkmpaiaireldgsvrtvreftyadyeqsls 348 d1hkva2 266 --------------------------------------- 266 FAST alignment (Normalized score: 10.67 Raw score:3241.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGA-----KALLALKCFATWSVFDLMRDYM--D 53 ::::::::::::::: :::::::::::::::::::: : d1hkva2 1 ---------DEDDFRSRCRETAAA------FGSGANVHYAAKAFLCSEVARWISE--EGL 43 query 54 GTTSSSLFEVRLGRERFGK------ETHAYSVAYGDNEIDEVVS-HADKIIFNSISQLER 106 ::::::::::::::: ::::::::::::::::::: ::::::::::::::: d1hkva2 44 CLDVCTGGELAVALH----ASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIER 99 query 107 FADKAA-----GIARGLRLNP-----------------QRLGEWDV----PKVERVMD-- 138 ::::: ::::::::: ::::: :::::::: d1hkva2 100 LDAIA-GEAGIVQDVLVRLT-VGVEAHTHEFISTAHEDQKFGL---SVASGAAMAAVRRV 154 query 139 ------RINGFMIHNNCENKDFGLFDRMLGEIEERFGALIAR----------------VD 176 :::::::::::::::::::::::::::: :: d1hkva2 155 FATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIG--------LLRDVVGEFGPEKTAQIA 206 query 177 WVSLGGGIHFTGDDY------------PVDAFSARLRAFSDRY--------GVQIYLEPG 216 ::::::: ::::::::::::::: ::::::::: d1hkva2 207 TVDLGGG--------LGISYLPSDDPPPIAELAAKLGTIVSD-ESTAVGLPTPKLVVEPG 257 query 217 EASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYRETAKVLPNEGSHSYMICGK 276 ::::::: d1hkva2 258 RAIAGPG----------------------------------------------------- 264 query 277 SCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNGVKMPAIAIRELDGSVRTVR 336 d1hkva2 265 ------------------------------------------------------------ 265 query 337 EFTYADYEQSLS- 348 d1hkva2 265 ------------T 265 TMalign alignment (TM-score: 0.54 Raw score:186.58) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSL 60 ::::::::::::::::: ::::::::::::::::::::::::::::::::: d1hkva2 1 ---------DEDDFRSRCRETAAAFG-SGANVHYAAKAFLCSEVARWISEEGLCLDVCTG 50 query 61 FEVRLGRER-FG-KETHAYSVAYGDNEIDEVVSH-ADKIIFNSISQLERFADKAA---G- 113 ::::::::: :: ::::::::::::::::::::: :::::::::::::::::::: : d1hkva2 51 GELAVALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIV 110 query 114 IARGLRLNPQ----------------RLGEW---D-VPKVERVMD-R---IN-GFMIHNN 148 :::::::::: ::::: : ::::::::: : :: ::::::: d1hkva2 111 QDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIG 170 query 149 CENKDFGLFDRMLGEIEERFGALI----A--R--VDWVSLGGGIHFT-----GDDYPVDA 195 :::::::::::::::::::::::: : : ::::::::::::: :::::::: d1hkva2 171 SQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAEL 230 query 196 FSARLRAFS--DR----YGVQIYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAH 249 ::::::::: :: :::::::::::::::::: d1hkva2 231 AAKLGTIVSDESTAVGLPTPKLVVEPGRAIAGPGT------------------------- 265 query 250 MLDLLIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTM 309 d1hkva2 266 ------------------------------------------------------------ 266 query 310 VKKNWFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1hkva2 266 --------------------------------------- 266 HHsearch alignment (Probability: 1.00 E-value:0.00) query 10 DKAKLTRNMERIAHVREKSGAKALLALKCFATWSVFDLMRDYMDGTTSSSLFEVRLGRER 69 ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: d1hkva2 1 DEDDFRSRCRETAAAFG-SGANVHYAAKAFLCSEVARWISEEGLCLDVCTGGELAVALHA 59 query 70 FGKETHAYS--VAYGDNEIDEVVSHAD-KIIFNSISQLERFADKAAGIA----RGLRLNP 122 ::::::::: :::::::::::::::: ::::::::::::::::::::: ::::::: d1hkva2 60 SFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEIERLDAIAGEAGIVQDVLVRLTV 119 query 123 ----------------QRLGEWDVP--KVERVMDR-------INGFMIHNNCENKDFGLF 157 ::::::::: :::::::: :::::::::::::::::: d1hkva2 120 GVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHLRLVGLHSHIGSQIFDVDGF 179 query 158 DRMLGEIEERFGAL--------IARVDWVSLGGGIHFTGDDYP----VDAFSARLRAFSD 205 :::::::::::::: ::::::::::::::::::::: ::::::::::::: d1hkva2 180 ELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDDPPPIAELAAKLGTIVS 239 query 206 RY-------GVQIYLEPGEASITKS 223 :: :::::::::::::::: d1hkva2 240 DESTAVGLPTPKLVVEPGRAIAGPG 264
Intermediate <-- 1.357 --> HitDALI alignment (Z-score: 10.4 Raw score:1205.40) d1hkva2 1 deddfrsrcretaaafgsganVHYAAK-----aflCSEVARWISEEGL-CLDVCTGGelA 54 :::::: ::::::::::::: :::::::: : d1aq0a_ 1 ---------------------IGVCYGmsannlpaASTVVSMFKSNGIkSMRLYAPN--Q 37 d1hkva2 55 VALHA--SFPPeRITLH-GNNK----------svSELTAAVKA----gVGHIVVD----- 92 ::::: :::: ::::: :::: ::::::::: ::::::: d1aq0a_ 38 AALQAvgGTGI-NVVVGaPNDVlsnlaaspaaaaSWVKSNIQAypkvsFRYVCVGnevag 96 d1hkva2 93 -----SMTEIERLDAIAGEAGIV-QDVLVRLTVGveahthefistahedqkfglsvASGA 146 :::::::::::::::::: :::::::::: :::: d1aq0a_ 97 gatrnLVPAMKNVHGALVAAGLGhIKVTTSVSQA------ilgvfsppsagsftgeAAAF 150 d1hkva2 147 AMAAVRRVFATdhlrlVGLHSHIG----------------------------sqifdvDG 178 ::::::::::: :::::::: :: d1aq0a_ 151 MGPVVQFLART----nAPLMANIYpylawaynpsamdmgyalfnasgtvvrdgaygyqNL 206 d1hkva2 179 FELAAHRVIGLLRDVVgefgpektAQIAtVDLGGGLGI-SYLPSDD---PPPI-AELAAK 233 :::::::::::::::: :::: ::::::::: ::::::: :::: :::::: d1aq0a_ 207 FDTTVDAFYTAMGKHG-------gSSVK-LVVSESGWPsGGGTAATpanARFYnQHLINH 258 d1hkva2 234 LGTiVSDEStavglpTPKLVVEPGR--------------AIAGPGT--------- 265 ::: ::::: :::::::::: ::::::: d1aq0a_ 259 VGR-GTPRH------PGAIETYIFAmfnenqkdsgveqnWGLFYPNmqhvypinf 306 FAST alignment (Normalized score: 5.65 Raw score:1609.00) d1hkva2 1 DEDDFRSRCRETAAAFGSGANVHYAAKAFL----------CSEVARWISEEG-LCLDVC- 48 :::: :::::::::::: :::::: d1aq0a_ 1 ---------------------IGVC-----YGMSANNLPAASTVVSMFKSNGIKSMRLYA 34 d1hkva2 49 -TGGELAVALHASFPPERITLHGNN-----------KSVSELTAAVKAG----------V 86 ::::::::::::: :::: ::::::::::: : d1aq0a_ 35 PNQAALQAVGGTGI---NVVV----GAPNDVLSNLAASPAAAASWVK--SNIQAYPKVSF 85 d1hkva2 87 GHIVVD------------SMTEIERLDAIAGEAG-IVQDVLVRLTVGVEAHTHEFISTAH 133 :::: :::::::::::::::: :::::::::: d1aq0a_ 86 RYVC--VGNEVAGGATRNLVPAMKNVHGALVAAGLGHIKVTTSVS--------------- 128 d1hkva2 134 EDQKFGLSVAS--------------------GAAMAAVRRVFATDHLRL-VGLHSHIGSQ 172 ::::::::::::: :::::: d1aq0a_ 129 -----------QAILGVFSPPSAGSFTGEAAAFMGPVVQFLART-----NAPLMAN---- 168 d1hkva2 173 IFDV------------------------------------DGFELAAHRVIGLLRDVVGE 196 :::::::::: :::::: d1aq0a_ 169 ----IYPYLAWAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAF---YTAMGK- 220 d1hkva2 197 FGPE-KTAQIATVDLGGGLGISYLPSDDPP----------PIAELAAKLGTIVSDESTAV 245 ::::: :::::::::: :::::::::::::: d1aq0a_ 221 ----HGGSSV-KLVVSESGWP---------SGGGTAATPANARFYNQHLINHVG------ 260 d1hkva2 246 GLP------TPKLVVEPGRAIAGPGT--------------------------------- 265 ::::::: d1aq0a_ 261 ---RGTPRHPGAIETY----------IFAMFNENQKDSGVEQNWGLFYPNMQHVYPINF 306 TMalign alignment (TM-score: 0.55 Raw score:145.32) d1hkva2 1 DEDDFRSRCRETAAAFGSGANVHYAAKAFLCSEVARWISEEGLCLDVCT-----GGELAV 55 ::::::: :::::: d1aq0a_ 1 ------------------------------------------IGVCYGMSANNLPAASTV 18 d1hkva2 56 ALHA-SFPPERITLHGNNKSVSELTAAVKAGVGHIVVD---S----------M-TEIERL 100 :::: :::: :::::::::: ::::::::::::::::: : : :::::: d1aq0a_ 19 VSMFKSNGI-KSMRLYAPNQ-AALQAVGGTGINVVVGAPNDVLSNLAASPAAAASWVKSN 76 d1hkva2 101 DAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHL 160 ::::: : ::::::::::::: :::: :::: :::::::::::::::: d1aq0a_ 77 IQAYP-K-VSFRYVCVGNEVA---------GGAT-----RNLV-PAMKNVHGALVAAGLG 119 d1hkva2 161 RLVGLHSHIGSQIFDVDGF-------EL--AAHRVIGLLRDVVGEFGPEKTAQIATVDLG 211 :::::::::: : ::::: :: :::::::::::::: :: : ::::: d1aq0a_ 120 HIKVTTSVSQ--A-ILGVFSPPSAGSFTGEAAAFMGPVVQFLAR------TN-A-PLMAN 168 d1hkva2 212 GGL-G-ISYLPSDDPP-PI-----------------AELAAKLGTIVSDESTAVGLPTPK 251 ::: : :::::::::: :: :::::::::::::::::::::::: d1aq0a_ 169 IYPYLAWAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKL 228 d1hkva2 252 LVVEPGRAIAG----PGT------------------------------------------ 265 :::::: :::: ::: d1aq0a_ 229 VVSESG-WPSGGGTAATPANARFYNQHLINHVGRGTPRHPGAIETYIFAMFNENQKDSGV 287 d1hkva2 266 ------------------- 266 d1aq0a_ 288 EQNWGLFYPNMQHVYPINF 306 HHsearch alignment (Probability: 0.12 E-value:0.08) d1hkva2 29 FLCSEVARWISEEGLCLDVCTGGE 52 :::::::::::::::::::::::: d1aq0a_ 34 APNQAALQAVGGTGINVVVGAPND 57