Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1dosa_ | Fructose-bisphosphate aldolase (FBP aldolase) | Aldolase | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 1.403 --> HitDALI alignment (Z-score: 12.1 Raw score:1299.80) d1tqja_ 1 ---------------------------kNIVVAPSILsadfsrLGEEIKAVDEAG----- 28 ::::::::: :::::::::::: d1dosa_ 1 skifdfvkpgvitgddvqkvfqvakennFALPAVNCV------GTDSINAVLETAakvka 54 d1tqja_ 29 aDWIHVDVM--------dgrfvpnitIGPLIVDAIRPLTK---------KTLDVHLMIVE 71 :::::::: :::::::::::::: ::::::::::: d1dosa_ 55 pVIVQFSNGgasfiagkgvksdvpqgAAILGAISGAHHVHqmaehygvpVILHTDHCAKK 114 d1tqja_ 72 PEKYVEDFAKAG-----------ADIISVHVEHNasPHLHRTLCQIRELG----KKAGAV 116 :::::::::::: ::::::::::: :::::::::::::: :::::: d1dosa_ 115 LLPWIDGLLDAGekhfaatgkplFSSHMIDLSEEslQENIEICSKYLERMskigMTLEIE 174 d1tqja_ 117 LN-----------------pSTPL-DFLEYVLPV------cDLILIM--SVNPQ---sfi 147 :: :::: ::::::::: :::::: ::::: d1dosa_ 175 LGctggeedgvdnshmdasaLYTQpEDVDYAYTElskisprFTIAASfgNVHGVykagnv 234 d1tqja_ 148 PEVLPKIRALRQMCDERG----lDPWIEVDGGLKPNN--TWQVLEAGANAIVAGSAVFNA 201 :::::::::::::::::: :::::::::::::: ::::::::::::::::::::: d1dosa_ 235 VLTPTILRDSQEYVSKKHnlphnSLNFVFHGGSGSTAqeIKDSVSYGVVKMNIDTDTQWA 294 d1tqja_ 202 P--------------------------------------------NYAEAIAGVRNS--- 214 : :::::::::::: d1dosa_ 295 TwegvlnyykaneaylqgqlgnpkgedqpnkkyydprvwlragqtSMIARLEKAFQElna 354 d1tqja_ 215 --kr 216 d1dosa_ 355 idvl 358 FAST alignment (Normalized score: 7.70 Raw score:2142.00) d1tqja_ 1 ---------------------------KNIVVAPSILSADFSR--LGEEIKAVDEAGA-- 29 :::::::: :::::::::: d1dosa_ 1 SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVN--------CVGTDSINAVLE---TA 49 d1tqja_ 30 ------DWIHVDVMDGRFVPNITI------------------------GPLIVDAIRPL- 58 :::::: ::::::::::: d1dosa_ 50 AKVKAPVIVQFS------------NGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMA 97 d1tqja_ 59 ----TKKTLDVHLMIV-----EPEKYVEDFAKA------------GADIISVHVEHNAS- 96 ::::::: ::::::::::: :::::::: d1dosa_ 98 EHYGVPVILHT-----DHCAKKLLPWIDGLLD-AGEKHFAATGKPLFSSHMID------L 145 d1tqja_ 97 -----PHLHRTLCQIRE----LGKKAGAVLNP--------------------STPLDFLE 127 :::::::::::: ::::::::: :::::::: d1dosa_ 146 SEESLQENIEICSKYLERMSKIGMTLEIEL--GCTGGEEDGVDNSHMDASALYTQPEDVD 203 d1tqja_ 128 YVLPVC--------DLILIMSVNPQSFIPE---------------VLPKIRALRQMCDER 164 :::: :::::: :::::::::::::: d1dosa_ 204 YAYT--ELSKISPRFTIAAS----------FGNVHGVYKAGNVVLTPTILRDSQEYVSK- 250 d1tqja_ 165 GL-------DPWIEVD--GGLKPNNTWQVLEAGANAIVAGSAVFNAP------------- 202 ::::::: ::::::::::::::::::::::::::: d1dosa_ 251 --KHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQW--ATWEGVLNYYKAN 306 d1tqja_ 203 ---------------------------------NYAEAIAGVRNSKR--------- 216 :::::::::: d1dosa_ 307 EAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAF----QELNAIDVL 358 TMalign alignment (TM-score: 0.72 Raw score:155.54) d1tqja_ 1 ---------------------K-N----IVVAPSILSADFSRLGEEIKAVDE-AGADWIH 33 : : :::::::: :::::::::::::: ::::::: d1dosa_ 1 SKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNC--VGTDSINAVLETAAKVKAPVIV 58 d1tqja_ 34 VDVMDGRFVPNITI----------------G---PL-IVDAIRPLT-----KKTLDVHLM 68 :::: ::: : :: ::::::::: ::::::::: d1dosa_ 59 QFSN-------GGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHC 111 d1tqja_ 69 IV--EP-EKYVEDFA--K------AGADIISVHVE-HN--AS-PHLHRTLCQIRELGKKA 113 :: :: :::::::: : ::::::::::: :: :: ::::::::::::::::: d1dosa_ 112 AKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTL 171 d1tqja_ 114 GAVLNPS-----------------TPL--D--FLEYVLP--V-CDLILIM--SVNPQSF- 146 ::::::: ::: : ::::::: : ::::::: ::::::: d1dosa_ 172 EIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKA 231 d1tqja_ 147 --IPEVLPKIRALRQMCDE-R-GL--DPWIEVDGGL-KPN-NTWQVLEAGANAIVAGSAV 198 ::::::::::::::::: : :: :::::::::: ::: ::::::::::::::::::: d1dosa_ 232 GNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDT 291 d1tqja_ 199 F-N----------------------------------------------A-PNYAEAIAG 210 : : : ::::::::: d1dosa_ 292 QWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQE 351 d1tqja_ 211 VRN----SKR 216 ::: d1dosa_ 352 LNAIDVL--- 358 HHsearch alignment (Probability: 0.48 E-value:0.05) d1tqja_ 6 APSILSADFSRLGEEIKAVDEAGADWIH------VDVMDGRFVPNITI----------GP 49 :::::::::::::::::::::::::::: :::::::::::::: :: d1dosa_ 31 LPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGA 90 d1tqja_ 50 LIVDAIRPLTKKTLDVHLMIV-------------EPEKYVEDFAKAGADIISVHVEHNAS 96 ::::::::::::::::::::: :::::::::::::::::::::::::: d1dosa_ 91 HHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESL 150 d1tqja_ 97 PHL----HRTLCQIRELGKKA----GAVL--------------NPSTPLDFL----EYVL 130 ::: :::::::::::::: :::: ::::::::: :::: d1dosa_ 151 QENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELS 210 d1tqja_ 131 P--VCDLI--L---IMSVNP-Q--SFIPEVLPKIRALRQMCDER------GLDPWIEVDG 174 : ::::: : :::::: : ::::: :::::::::::: :::::::::: d1dosa_ 211 KISPRFTIAASFGNVHGVYKAGNVVLTPT---ILRDSQEYVSKKHNLPHNSLNFVFHGGS 267 d1tqja_ 175 GLKPNNTWQVLEAGANAIVAGSAV 198 :::::::::::::::::::::::: d1dosa_ 268 GSTAQEIKDSVSYGVVKMNIDTDT 291