Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1onra_ | Transaldolase | Aldolase | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 1.419 --> HitDALI alignment (Z-score: 11.7 Raw score:1209.90) d1tqja_ 1 --------kNIVVAPSILsadfsrLGEEIKAVDeagADWIHVDVM--------------- 37 ::::::::: ::::::::: ::::::::: d1onra_ 1 tdkltslrqYTTVVADTG------DIAAMKLYQ---PQDATTNPSlilnaaqipeyrkli 51 d1tqja_ 38 ---------------dgrfvpnitIGPLIVDAIRPLTKKTLDVHLMIVE------PEKYV 76 ::::::::::::::::::::::::: ::::: d1onra_ 52 ddavawakqqsndraqqivdatdkLAVNIGLEILKLVPGRISTEVDARLsydteaSIAKA 111 d1tqja_ 77 EDFAKAG--------aDIISVHVEhnasPHLHRTLCQIRELGKKAGAVLNpsTPLDFLEY 128 ::::::: :::::::: :::::::::::::::::::::: :::::::: d1onra_ 112 KRLIKLYndagisndrILIKLAST----WQGIRAAEQLEKEGINCNLTLL--FSFAQARA 165 d1tqja_ 129 VLP-VCDLILIMSVN-------------pqsfiPEVLPKIRALRQMCDERGLDPWIEVDG 174 ::: ::::::::::: ::::::::::::::::::::::::::: d1onra_ 166 CAEaGVFLISPFVGRildwykantdkkeyapaeDPGVVSVSEIYQYYKEHGYETVVMGAS 225 d1tqja_ 175 GLKPNNTWQVLEagANAIVAG-SAVFNAPNyaeaiagvrNSKR----------------- 216 :::::::::::: ::::::: :::::::: :::: d1onra_ 226 FRNIGEILELAG--CDRLTIApALLKELAE------segAIERklsytgevkarparite 277 d1tqja_ 217 --------------------------------------- 217 d1onra_ 278 seflwqhnqdpmavdklaegirkfaidqeklekmigdll 316 FAST alignment (Normalized score: 7.88 Raw score:2058.00) d1tqja_ 1 K---------NIVVAPSILSADFSR---LGEEIKAVDEAGADWIHVDVMDGRFVPNITI- 47 :::::: ::::::: ::::::::: d1onra_ 1 -TDKLTSLRQYTTVVA---------DTGDIAAMKL---YQPQDATTN------------P 35 d1tqja_ 48 -----------------------------------------GPLIVDAIRPLTKKTLDVH 66 ::::::::::::::::::: d1onra_ 36 SLILNAAQIPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTE 95 d1tqja_ 67 LMIV----------EPEKYVEDFAKAGA-----------DIISVHVEHNASPHLHRTLCQ 105 ::::::::::: :::::::: ::::::::: d1onra_ 96 ----VDARLSYDTEASIAKAKRLIK---LYNDAGISNDRILIKLAST----WQGIRAAEQ 144 d1tqja_ 106 IRELGKKAGAVLNPS---TPLDFLEYVLP-VCDLILIMSVNPQSFI-------------- 147 :::::::::: ::::::::::: ::::::::: d1onra_ 145 LEKEGINCNL-----TLLFSFAQARACAEAGVFLISPFV-------GRILDWYKANTDKK 192 d1tqja_ 148 ------PEVLPKIRALRQMCDERGLDPWIEVDGG--LKPNNTWQVLE-AGANAIVA-GSA 197 :::::::::::::::::::::::::: :::::::: :::::::: ::: d1onra_ 193 EYAPAEDPGVVSVSEIYQYYKEHGYETVVMGA--SFRNIGEILE---LAGCDRLTIAPAL 247 d1tqja_ 198 VFNAPNYAEAIAGVRNSKR----------------------------------------- 216 ::: d1onra_ 248 LKE----------------LAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAV 291 d1tqja_ 217 ------------------------- 217 d1onra_ 292 DKLAEGIRKFAIDQEKLEKMIGDLL 316 TMalign alignment (TM-score: 0.67 Raw score:144.51) d1tqja_ 1 --------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNIT-I---- 47 :::::::::: : : ::::: :::::::::::: ::: : d1onra_ 1 TDKLTSLRQYTTVVADTG-D----I--AAMKL--YQPQDATTNPSL-----ILNAAQIPE 46 d1tqja_ 48 --------------------------GP-LIVDAIRP--LT-KKTLDVHLMIVEP----- 72 :: :::::::: :: ::::::::::::: d1onra_ 47 YRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEA 106 d1tqja_ 73 E-KYVEDFAKAG--------ADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPL 123 : :::::::::: ::::::::: :::::::::::::::::::::: ::: d1onra_ 107 SIAKAKRLIKLYNDAGISNDRILIKLAST----WQGIRAAEQLEKEGINCNLTLL--FSF 160 d1tqja_ 124 DFLEYVLP-VCDLILIMSVNPQSFI-------------PEVLPKIRALRQMCDERGLDPW 169 :::::::: :::::::::::::::: :::::::::::::::::::::: d1onra_ 161 AQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETV 220 d1tqja_ 170 IEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGV-RNSK-R----------- 216 :::::::::::::::: :::::::::::: :: :: ::: ::: : d1onra_ 221 VMGASFRNIGEILELA--GCDRLTIAPALL-KE---LA-ESEG-AIERKLSYTGEVKARP 272 d1tqja_ 217 -------------------------------------------- 217 d1onra_ 273 ARITESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL 316 HHsearch alignment (Probability: 0.36 E-value:0.01) d1tqja_ 150 VLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVF 199 ::::::::::::::::::::::::::::::::::: ::::::::::::: d1onra_ 201 GVVSVSEIYQYYKEHGYETVVMGASFRNIGEILEL--AGCDRLTIAPALL 248