Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1hw6a_ | 2,5-diketo-D-gluconic acid reductase A | NAD(P)-linked oxidoreductase | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 1.477 --> HitDALI alignment (Z-score: 13.5 Raw score:1272.60) d1tqja_ 1 -----------KNIVVAPSIlSADF-SRLGEEIKAVDEAGADWIHVDvmdgrfvpniTIG 48 ::::::::: :::: ::::::::::::::::::::: ::: d1hw6a_ 1 tvpsivlndgnSIPQLGYGV-FKVPpADTQRAVEEALEVGYRHIDTA----------AIY 49 d1tqja_ 49 PlIVDAIRPLT--------KKTLDVHLMIVEPEKYVEDFAKAG----ADIISVHVEHN-- 94 : ::::::::: :::::::::::::::::::::::: ::::::::::: d1hw6a_ 50 G-NEEGVGAAIaasgiardDLFITTKLWNDEPAAAIAESLAKLaldqVDLYLVHWPTPaa 108 d1tqja_ 95 -aSPHLHRTLCQIR-ELGK-KAGAVLnpsTPLDFLEYVL----PVCDLILIMSvnpqsFI 147 :::::::::::: :::: :::::: :::::::::: :::::::::: :: d1hw6a_ 109 dnYVHAWEKMIELRaAGLTrSIGVSN---HLVPHLERIVaatgVVPAVNQIEL-----HP 160 d1tqja_ 148 PEVLP-KIRALRQMCdergldPWIEVDGGL------------------------KPNNTW 182 ::::: ::::::::: ::::::::: :::::: d1hw6a_ 161 AYQQReITDWAAAHD------VKIESWGPLgqgkydlfgaepvtaaaaahgktpAQAVLR 214 d1tqja_ 183 QVLEAGAnAIVAGsaVFNAPNYAEAIAGvrNSKR-------------- 216 ::::::: ::::: ::::::::::::: :::: d1hw6a_ 215 WHLQKGF-VVFPK--SVRRERLEENLDV--FDFDltdteiaaidamdp 257 FAST alignment (Normalized score: 8.44 Raw score:1988.00) d1tqja_ 1 KNI--------------VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNIT 46 :::::::::::::::::::::::::::::: d1hw6a_ 1 ---TVPSIVLNDGNSIPQLGYGVFKVPPADTQRAVEEALEVGYRHID------------- 44 d1tqja_ 47 IG-------PLIVDAIRPLT-----KKTLDVHLMIV--EPEKYVEDFAK----AGADIIS 88 ::::::::::: ::::::::: ::::::::::: ::::::: d1hw6a_ 45 --TAAIYGNEEGVGAAIAASGIARDDLFITTKLW--NDEPAAAIAESLAKLALDQVDLYL 100 d1tqja_ 89 VHVEHNA----SPHLHRTLCQIRELG-------KKAGAVLNP-STPLDFLEYVLP----- 131 ::: ::::::::::::: ::::: ::::::::: d1hw6a_ 101 VHW----PTPAADNYVHAWEKMIE--LRAAGLTRSIGV----SNHLVPHLER---IVAAT 147 d1tqja_ 132 --VCDLILIMSVNPQSF--IPEVLPK-IRALRQMCDERGLDPWIEVDGGL---------- 176 ::::::: :::: :::::::::: :::::::: d1hw6a_ 148 GVVPAVNQI--------ELHPAY---QQREITDWAAA--HDVKIESW---GPLGQGKYDL 191 d1tqja_ 177 -----------------KPNNTWQVLEAGANAIVAGSAVFNAPN---YAEAIAGVRNSKR 216 :::::::::::: ::::: ::::::::::: d1hw6a_ 192 FGAEPVTAAAAAHGKTPAQAVLRWHLQKG-FVVFP---------KSVRRERLEENLDV-- 239 d1tqja_ 217 ------------------ 217 d1hw6a_ 240 FDFDLTDTEIAAIDAMDP 257 TMalign alignment (TM-score: 0.71 Raw score:152.71) d1tqja_ 1 ---KN--------IVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGP 49 :: :::::::::::::::::::::::::::::::::: ::: d1hw6a_ 1 TVPSIVLNDGNSIPQLGYGVFKVPPADTQRAVEEALEVGYRHIDTAA---------IYG- 50 d1tqja_ 50 LIVDAIRPLT----K----KTLDVHLMIVEPEKYVEDFAKA--G--ADIISVHVEHN--- 94 ::::::::: : :::::::::::::::::::::: : ::::::::::: d1hw6a_ 51 -NEEGVGAAIAASGIARDDLFITTKLWNDEPAAAIAESLAKLALDQVDLYLVHWPTPAAD 109 d1tqja_ 95 ASPHLHRTLCQIRELG-K-KAGAVLNPSTPLDFLE-YV---LPVCDLILIMSVNPQSFIP 148 :::::::::::::::: : :::::: ::::::: :: ::::::::::: ::: d1hw6a_ 110 NYVHAWEKMIELRAAGLTRSIGVSN---HLVPHLERIVAATGVVPAVNQIEL-----HPA 161 d1tqja_ 149 EVLP-KIRALRQMCDERGLDPWIEVDGGL------------------------KPNNTWQ 183 :::: ::::::: : : ::::::::: ::::::: d1hw6a_ 162 YQQREITDWAAA-H----D-VKIESWGPLGQGKYDLFGAEPVTAAAAAHGKTPAQAVLRW 215 d1tqja_ 184 VLEAGANAIVAGSAVFNAPNYAEAIAGVRNSK---R--------- 216 :::::: ::::: :::::::::::::::::: : d1hw6a_ 216 HLQKGF-VVFPK--SVRRERLEENLDVFDFDLTDTEIAAIDAMDP 257 HHsearch alignment (Probability: 0.15 E-value:0.07) d1tqja_ 10 LSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIV-DAIRPLTKKTLDVHLM 68 :::::::::::::::::::::: :::::: ::: :::: :::::::::::::::: d1hw6a_ 21 FKVPPADTQRAVEEALEVGYRH--IDTAAI-----YGN-EEGVGAAIAASGIARDDLFIT 72 d1tqja_ 69 IV----EPEKYVEDF-AKA---GADIISVHVEHNASP---HLHRTLCQIRELGK--KAGA 115 :: ::::::::: ::: ::::::::::::::: :::::::::::::: :::: d1hw6a_ 73 TKLWNDEPAAAIAESLAKLALDQVDLYLVHWPTPAADNYVHAWEKMIELRAAGLTRSIGV 132 d1tqja_ 116 VLNPSTPLDFLEYVL 130 ::::::::::::::: d1hw6a_ 133 SNHLVPHLERIVAAT 147