Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1uwsa_ | beta-Glycosidase | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 1.495 --> HitDALI alignment (Z-score: 11.3 Raw score:1322.20) d1tqja_ 1 -----KNIVVAPSIL-----------------------------------------saDF 14 :::::::::: :: d1uwsa_ 1 mysfpNSFRFGWSQAgfqsemgtpgsedpntdwykwvhdpenmaaglvsgdlpengpgYW 60 d1tqja_ 15 SRLGEEIKAVDEAGADWIHVDVMDG----------------------------------r 40 ::::::::::::::::::::::::: d1uwsa_ 61 GNYKTFHDNAQKMGLKIARLNVEWSrifpnplprpfdeskqdvteveinenelkrldeya 120 d1tqja_ 41 fvpnitiGPLIVDAIRPlTKKTLDVHLMIV------------------------------ 70 :::::::::: :::::::::::: d1uwsa_ 121 nkdalnhYREIFKDLKS-RGLYFILNMYHWplplwlhdpirvrrgdftgpsgwlstrtvy 179 d1tqja_ 71 ----EPEKYVEDFAKaGADIISVH--VEHN----------------------------as 96 ::::::::::: :::::::: :::: d1uwsa_ 180 efarFSAYIAWKFDD-LVDEYSTMnePNVVgglgyvgvksgfppgylsfelsrramynii 238 d1tqja_ 97 PHLHRTLCQIRE-LGKKAGAVLNPS-------------------TPLDFLEYVL------ 130 :::::::::::: :::::::::::: :::::::::: d1uwsa_ 239 QAHARAYDGIKSvSKKPVGIIYANSsfqpltdkdmeavemaendNRWWFFDAIIrgeitk 298 d1tqja_ 131 -------PVCDLILIMSV-------------------------------------npqSF 146 ::::::::::: :: d1uwsa_ 299 ivrddlkGRLDWIGVNYYtrtvvkrtekgyvslggyghgcernsvslaglptsdfgweFF 358 d1tqja_ 147 IPEVLPKIRALRQMCDergldPWIEV-DGGL-----------KPNNTWQVLEAG-----A 189 :::::::::::::::: ::::: :::: :::::::::::: : d1uwsa_ 359 PEGLYDVLTKYWNRYH-----LYMYVtENGIaddadyqrpyyLVSHVYQVHRAInsgadV 413 d1tqja_ 190 NAIVAGS---------------AVFN----------APNYAEAIAG--vRNSK------- 215 ::::::: :::: :::::::::: :::: d1uwsa_ 414 RGYLHWSladnyewasgfsmrfGLLKvdyntkrlywRPSALVYREIatnGAITdeiehln 473 d1tqja_ 216 ---------r 216 d1uwsa_ 474 svppvkplrh 483 FAST alignment (Normalized score: 6.34 Raw score:2049.00) d1tqja_ 1 -----KNIVVAPSILSA------------------------------------------- 12 :::::::: d1uwsa_ 1 MYSFPNSFRFGWS----QAGFQSEMGTPGSEDPNTDWYKWVHDPENMAAGLVSGDLPENG 56 d1tqja_ 13 --DFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITI----------------------- 47 ::::::::::::::::::::::::: d1uwsa_ 57 PGYWGNYKTFHDNAQKMGLKIARLNVE----------WSRIFPNPLPRPFDESKQDVTEV 106 d1tqja_ 48 ---------------------GPLIVDAIRPLTKKTLDVHLMIV---------------- 70 :::::::::: :::::::: d1uwsa_ 107 EINENELKRLDEYANKDALNHYREIFKDLKS-RGLYFILN----MYHWPLPLWLHDPIRV 161 d1tqja_ 71 ------------------EPEKYVEDFAK---AGADIISVHVEHNAS------------- 96 ::::::::::: ::::::: d1uwsa_ 162 RRGDFTGPSGWLSTRTVYEFARFSAYIAWKFDDLVDEYS--------TMNEPNVVGGLGY 213 d1tqja_ 97 -------------------------PHLHRTLCQIRE-LGKKAGAVLNPST--------- 121 :::::::::::: :::::::::: d1uwsa_ 214 VGVKSGFPPGYLSFELSRRAMYNIIQAHARAYDGIKSVSKKPVGIIYA---NSSFQPLTD 270 d1tqja_ 122 -------------PLDFLEYVL-------------PVCDLILIMSVNPQSF--------- 146 ::::::::: ::::::::: d1uwsa_ 271 KDMEAVEMAENDNRWWFFDAIIRGEITKIVRDDLKGRLDWIGVN-------YYTRTVVKR 323 d1tqja_ 147 -----------------------------------IPEVLPKIRALRQMCDERGLDPWIE 171 ::::::::::::: ::::::: d1uwsa_ 324 TEKGYVSLGGYGHGCERNSVSLAGLPTSDFGWEFFPEGLYDVLTKYWN-----RYHLYMY 378 d1tqja_ 172 VDGGL---------------KPNNTWQVLE-----AGANAIVAGSAVFNAPNY------- 204 :: :::::::::: ::::::: d1uwsa_ 379 VT---ENGIADDADYQRPYYLVSHVYQVHRAINSGADVRGYL-----------HWSLADN 424 d1tqja_ 205 -------------------------AEAIAGVRNSKR----------------------- 216 :::::::: d1uwsa_ 425 YEWASGFSMRFGLLKVDYNTKRLYWRPSALVYR----EIATNGAITDEIEHLNSVPPVKP 480 d1tqja_ 217 --- 217 d1uwsa_ 481 LRH 483 TMalign alignment (TM-score: 0.70 Raw score:151.16) d1tqja_ 1 ----K-NIVVAPSIL---S-------------------------------------ADF- 14 : ::::::::: : ::: d1uwsa_ 1 MYSFPNSFRFGWSQAGFQSEMGTPGSEDPNTDWYKWVHDPENMAAGLVSGDLPENGPGYW 60 d1tqja_ 15 SRLGEEIKAVDEAGADWIHVDVMDG----------------------------------- 39 ::::::::::::::::::::::::: d1uwsa_ 61 GNYKTFHDNAQKMGLKIARLNVEWSRIFPNPLPRPFDESKQDVTEVEINENELKRLDEYA 120 d1tqja_ 40 ---RFVPNITIGPLIVDAIRPLTK---KTLDVH-LMI----------------------V 70 ::::::::::::: :::::: ::: : d1uwsa_ 121 NKD--------ALNHYREIFKDLKSRGLYFILNMYHWPLPLWLHDPIRVRRGDFTGPSGW 172 d1tqja_ 71 -----E--PEKYVEDFA-KA--GADIISVH--VE-------------------------- 92 : ::::::::: :: :::::::: :: d1uwsa_ 173 LSTRTVYEFARFSAYIAWKFDDLVDEYSTMNEPNVVGGLGYVGVKSGFPPGYLSFELSRR 232 d1tqja_ 93 -H-NASPHLHRTLCQIRELG-KKAGAVLNPS-------------------TPLDFLE-YV 129 : ::::::::::::::::: :::::::::: ::::::: :: d1uwsa_ 233 AMYNIIQAHARAYDGIKSVSKKPVGIIYANSSFQPLTDKDMEAVEMAENDNRWWFFDAII 292 d1tqja_ 130 L------------PVCDLILIMSVN----------------------------------- 142 : :::::::::::: d1uwsa_ 293 RGEITKIVRDDLKGRLDWIGVNYYTRTVVKRTEKGYVSLGGYGHGCERNSVSLAGLPTSD 352 d1tqja_ 143 PQ-SFIP--EVLPKIRALRQMCDERGLDPWIEVDGG-----------LKPNNTWQVLEA- 187 : :::: :::::::::::::: : :::::::: :::::::::::: d1uwsa_ 353 -FGWEFFPEGLYDVLTKYWNRYH---L-YMYVTENGIADDADYQRPYYLVSHVYQVHRAI 407 d1tqja_ 188 ---G-ANAIVA-G-S-------------AVFN---------APN-YAEAIAGV--RNS-- 214 : :::::: : : :::: ::: :::::::: ::: d1uwsa_ 408 NSGADVRGYLHWSLADNYEWASGFSMRFGLLKVDYNTKRLYWRPSALVYREIATNGAITD 467 d1tqja_ 215 --K--R---------- 216 : : d1uwsa_ 468 EIEHLNSVPPVKPLRH 483 HHsearch alignment (Probability: 0.01 E-value:0.39) d1tqja_ 14 FSRLGEEIKAVDEAGADWIHVDVMD 38 ::::::::::::::::::::::::: d1uwsa_ 60 WGNYKTFHDNAQKMGLKIARLNVEW 84