Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1ug6a_ | Beta-glucosidase A | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 1.583 --> HitDALI alignment (Z-score: 11.9 Raw score:1342.90) d1tqja_ 1 --KNIVVAPSIL-------------------------------------saDFSRLGEEI 21 :::::::::: ::::::::: d1ug6a_ 1 naEKFLWGVATSayqiegatqedgrgpsiwdafaqrpgairdgstgepacdHYRRYEEDI 60 d1tqja_ 22 KAVDEAGADWIHVDVMDG---------rfvpnitIGPLIVDAIRPlTKKTLDVHLMIV-- 70 :::::::::::::::::: ::::::::::: :::::::::::: d1ug6a_ 61 ALMQSLGVRAYRFSVAWPrilpegrgrinpkglaFYDRLVDRLLA-SGITPFLTLYHWdl 119 d1tqja_ 71 ---------------------EPEKYVEDFAKaGADIISVH--VEHN------------- 94 ::::::::::: :::::::: :::: d1ug6a_ 120 plaleerggwrsretafafaeYAEAVARALAD-RVPFFATLnePWCSaflghwtgehapg 178 d1tqja_ 95 -------------ASPHLHRTLCQIRE-LGKKAGAVLNPS----------------TPLD 124 :::::::::::::: :::::::::::: :::: d1ug6a_ 179 lrnleaalraahhLLLGHGLAVEALRAaGARRVGIVLNFApaygedpeavdvadryHNRF 238 d1tqja_ 125 FLEYVL--------------------------PVCDLILIMSV----------------- 141 :::::: ::::::::::: d1ug6a_ 239 FLDPILgkgypespfrdpppvpilsrdlelvaRPLDFLGVNYYapvrvapgtgtlpvryl 298 d1tqja_ 142 ---------npqSFIPEVLPKIRALRQMCderglDPWIEV-DGGL--------------- 176 ::::::::::::::::: :::::: :::: d1ug6a_ 299 ppegpatamgweVYPEGLYHLLKRLGREV-----PWPLYVtENGAaypdlwtgeavvedp 353 d1tqja_ 177 -----KPNNTWQVLEAG-----ANAIVAGS---------------AVFN---------AP 202 :::::::::::: :::::::: :::: :: d1ug6a_ 354 ervayLEAHVEAALRAReegvdLRGYFVWSlmdnfewafgytrrfGLYYvdfpsqrriPK 413 d1tqja_ 203 NYAEAIAGVRNskr 216 ::::::::::: d1ug6a_ 414 RSALWYRERIA-ra 426 FAST alignment (Normalized score: 7.22 Raw score:2192.00) d1tqja_ 1 --KNIVVAPSILSA-----------------------------------------DFSRL 17 :::::::: ::::: d1ug6a_ 1 NAEKFLWGVA----TSAYQIEGATQEDGRGPSIWDAFAQRPGAIRDGSTGEPACDHYRRY 56 d1tqja_ 18 GEEIKAVDEAGADWIHVDVMDGRFVPNITI---------------GPLIVDAIRPL---T 59 :::::::::::::::::::: ::::::::::: : d1ug6a_ 57 EEDIALMQSLGVRAYRFSVA----------WPRILPEGRGRINPKGLAFYDRLVDRLLAS 106 d1tqja_ 60 KKTLDVHLMIV-----------------------EPEKYVEDFAK---AGADIISVHVEH 93 ::::::: ::::::::::: ::::::: d1ug6a_ 107 GITPFLT----LYHWDLPLALEERGGWRSRETAFAFAEYAEAVARALADRVPFFA----- 157 d1tqja_ 94 NAS------------------------------------PHLHRTLCQIRELG-KKAGAV 116 :::::::::::::: :::::: d1ug6a_ 158 ---TLNEPWCSAFLGHWTGEHAPGLRNLEAALRAAHHLLLGHGLAVEALRAAGARRVGIV 214 d1tqja_ 117 LNPS------------------TPLDFLEYVLP--------------------------- 131 :: ::::::::: d1ug6a_ 215 LN--FAPAYGEDPEAVDVADRYHNRFFLDPI--LGKGYPESPFRDPPPVPILSRDLELVA 270 d1tqja_ 132 -VCDLILIMSVNPQSF---------------------------------IPEVLPKIRAL 157 :::::::: ::::::::::: d1ug6a_ 271 RPLDFLGVN-------YYAPVRVAPGTGTLPVRYLPPEGPATAMGWEVYPEGLYHLLKRL 323 d1tqja_ 158 RQMCDERGL-DPWIEVDGGL------------------------KPNNTWQVLE-----A 187 ::: ::::::: :::::::::: : d1ug6a_ 324 GRE------VPWPLYVT---ENGAAYPDLWTGEAVVEDPERVAYLEAHVEAALRAREEGV 374 d1tqja_ 188 GANAIVAGSAVFNAPNY----------------------------------AEAIAGVRN 213 ::::::: ::::::::: d1ug6a_ 375 DLRGYFV----------WSLMDNFEWAFGYTRRFGLYYVDFPSQRRIPKRSALWYRERIA 424 d1tqja_ 214 SKR-- 216 d1ug6a_ 425 ---RA 426 TMalign alignment (TM-score: 0.71 Raw score:153.91) d1tqja_ 1 --KNIVVAPSIL---S---------------------------------ADF-SRLGEEI 21 :::::::::: : ::: ::::::: d1ug6a_ 1 NAEKFLWGVATSAYQIEGATQEDGRGPSIWDAFAQRPGAIRDGSTGEPACDHYRRYEEDI 60 d1tqja_ 22 KAVDEAGADWIHVDVMDG-------------RFVPNITIGPLIVDAIRPLTK---KTLDV 65 :::::::::::::::::: ::::::::::::: ::::: d1ug6a_ 61 ALMQSLGVRAYRFSVAWPRILPEGRGRINPK--------GLAFYDRLVDRLLASGITPFL 112 d1tqja_ 66 H-LMI-----------V-----E--PEKYVEDFA-KA--GADIISVH--V---------- 91 : ::: : : ::::::::: :: :::::::: : d1ug6a_ 113 TLYHWDLPLALEERGGWRSRETAFAFAEYAEAVARALADRVPFFATLNEPWCSAFLGHWT 172 d1tqja_ 92 ----------------EHNASPHLHRTLCQIRELGK-KAGAVLNP--------------- 119 :::::::::::::::::::: :::::::: d1ug6a_ 173 GEHAPGLRNLEAALRAAHHLLLGHGLAVEALRAAGARRVGIVLNFAPAYGEDPEAVDVAD 232 d1tqja_ 120 --STP--LDFLEY-----------------------VLPVCDLILIMSVN---------- 142 ::: :::::: :::::::::::::: d1ug6a_ 233 RYHNRFFLDPILGKGYPESPFRDPPPVPILSRDLELVARPLDFLGVNYYAPVRVAPGTGT 292 d1tqja_ 143 --------------PQ-SFIP--EVLPKIRALRQMCDERGLDPWIEVDGGL--------- 176 : :::: ::::::::::::: ::::::::::: d1ug6a_ 293 LPVRYLPPEGPATA-MGWEVYPEGLYHLLKRLGREV----PWPLYVTENGAAYPDLWTGE 347 d1tqja_ 177 -----------KPNNTWQVLEAG-----ANAIVA-G-S-------------AVFN----- 200 :::::::::::: :::::: : : :::: d1ug6a_ 348 AVVEDPERVAYLEAHVEAALRAREEGVDLRGYFVWSLMDNFEWAFGYTRRFGLYYVDFPS 407 d1tqja_ 201 ----APN-YAEAIAGVRNSKR 216 ::: ::::::::::: d1ug6a_ 408 QRRIPKRSALWYRERIARA-- 426 HHsearch alignment (Probability: 0.01 E-value:0.22) d1tqja_ 9 ILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVP------N---ITIGPLIVDAIRPL 58 ::::::::::::::::::::::::::::::::::: : :::::::::::::: d1ug6a_ 48 PACDHYRRYEEDIALMQSLGVRAYRFSVAWPRILPEGRGRINPKGLAFYDRLVDRLLAS 106