Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1gvfa_ | Tagatose-1,6-bisphosphate aldolase | Aldolase | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 1.818 --> HitDALI alignment (Z-score: 14.6 Raw score:1397.20) d1tqja_ 1 ---------------KNIVVAPSILsadfsrLGEEIKAVDEAG-----aDWIHVDVmdgr 40 :::::::::: :::::::::::: ::::::: d1gvfa_ 1 siistkyllqdaqanGYAVPAFNIH------NAETIQAILEVCsemrspVILAGTP---- 50 d1tqja_ 41 fvpniTIGP-LIVDAIRPLT---------KKTLDVHLMIvePEKYVEDFAKAGADIISVH 90 :::: :::::::::: :::::::::: ::::::::::::::::::: d1gvfa_ 51 -----GTFKhIALEEIYALCsaysttynmPLALHLDHHE--SLDDIRRKVHAGVRSAMID 103 d1tqja_ 91 VEHN---aSPHL-HRTLCQIRELGKKAGAVLNP----STPL-DFLEYVLP--VCDLILIM 139 :::: :::: :::::::::::::::::::: :::: :::::::: :::::::: d1gvfa_ 104 GSHFpfaeNVKLvKSVVDFCHSQDCSVEAELGRlgsaFLTDpQEAKRFVEltGVDSLAVA 163 d1tqja_ 140 --SVNPQS--fiPEVLPKIRALRQMCderglDPWIEVDGGLKPNN--TWQVLEAGANAIV 193 :::::: :::::::::::::: :::::::::::::: ::::::::::::: d1gvfa_ 164 igTAHGLYsktpKIDFQRLAEIREVV-----DVPLVLHGASDVPDefVRRTIELGVTKVN 218 d1tqja_ 194 AGSAVFNAP--------------------------NYAEAIAGVRNS------kr 216 ::::::::: :::::::::::: d1gvfa_ 219 VATELKIAFagavkawfaenpqgndpryymrvgmdAMKEVVRNKINVcgsanris 273 FAST alignment (Normalized score: 9.62 Raw score:2335.00) d1tqja_ 1 ---------------KNIVVAPSILSADFSR--LGEEIKAVDEAGA--------DWIHVD 35 :::::::: :::::::::: :::::: d1gvfa_ 1 SIISTKYLLQDAQANGYAVPAFN--------IHNAETIQAILE---VCSEMRSPVILAGT 49 d1tqja_ 36 VMDGRFVPNITIGPL-------IVDAIRPL---------TKKTLDVHLMIVE----PEKY 75 :::::::: ::::::: :::: d1gvfa_ 50 ---------------PGTFKHIALEEIYALCSAYSTTYNMPLALHL------DHHESLDD 88 d1tqja_ 76 VEDFAKAGADIISVHVEHNASP------------HLHRTLCQIRELGKKAGAVLNP---- 119 :::::::::::::: ::::::::::::::::::: d1gvfa_ 89 IRRKVHAGVRSAMI--------DGSHFPFAENVKLVKSVVDFCHSQDCSVEAE---LGRL 137 d1tqja_ 120 ----STPLDFLEYVLP--VCDLILIMSVNPQSFIPE--------------VLPKIRALRQ 159 :::::::::::: :::::::: :::::::::: d1gvfa_ 138 GSAFLTDPQEAKRFVELTGVDSLAVA----------IGTAHGLYSKTPKIDFQRLAEIRE 187 d1tqja_ 160 MCDERGLDPWIEVDG---GLKPNNTWQVLEAGANAIVAGSAVFNAP-------------- 202 ::::::::: :::::::::::::::::::::::::: d1gvfa_ 188 -----VVDVPLVLH-GASDVPDEFVRRTIELGVTKVNVATELKI--AFAGAVKAWFAENP 239 d1tqja_ 203 --------------NYAEAIAGVRNSKR---------- 216 :::::::::: d1gvfa_ 240 QGNDPRYYMRVGMDAMKEVVRNKI----NVCGSANRIS 273 TMalign alignment (TM-score: 0.72 Raw score:155.94) d1tqja_ 1 -------------KN-IVVAPSILSADFSRLGEEIKAVDE-AGADWIHVDVMDGRFVPNI 45 :: :::::::: : ::::::::::::: ::::::::::: : d1gvfa_ 1 SIISTKYLLQDAQANGYAVPAFNI-H-NAETIQAILEVCSEMRSPVILAGTP-------G 51 d1tqja_ 46 TI---GPL-IVDAIRPLT-----KKTLDVHLMIVEPEKYVEDFAKAGADIISVHVE-HN- 94 :: ::: ::::::::: ::::::: ::: ::::::::::::::::::::: :: d1gvfa_ 52 TFKHIALEEIYALCSAYSTTYNMPLALHLD-HHE-SLDDIRRKVHAGVRSAMIDGSHFPF 109 d1tqja_ 95 -ASPH-LHRTLCQIRELGKKAGAVL-NP---STPL--DFLEYVL-PVCDLILIM--SVNP 143 :::: ::::::::::::::::::: :: :::: ::::::: ::::::::: :::: d1gvfa_ 110 AENVKLVKSVVDFCHSQDCSVEAELGRLGSAFLTDPQEAKRFVELTGVDSLAVAIGTAHG 169 d1tqja_ 144 QS--FIPEVLPKIRALRQMCDERGLDPWIEVDGG--LKPNNTWQVLEAGANAIVAG-SA- 197 :: :::::::::::::::: ::::::::: :::::::::::::::::::: :: d1gvfa_ 170 LYSKTPKIDFQRLAEIREVV-----DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELK 224 d1tqja_ 198 -V---------------------------FNAPNYAEAIAGVRNS-----KR 216 : ::::::: :::::::: d1gvfa_ 225 IAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVR-NKINVCGSANRIS-- 273 HHsearch alignment (Probability: 0.90 E-value:0.00) d1tqja_ 6 APSILSADFSRLGEEIKAVDEAGADWIHVDVMDGR--FVPNITIGPLIVDAIRPLTKKTL 63 ::::::::::::::::::::::::::: ::::::: ::::::: ::::::::::::::: d1gvfa_ 19 VPAFNIHNAETIQAILEVCSEMRSPVI-LAGTPGTFKHIALEEI-YALCSAYSTTYNMPL 76 d1tqja_ 64 DVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLH----RTLCQIRELGKKAGAV--- 116 ::::::::::::::::::::::::::::::::::::: :::::::::::::::: d1gvfa_ 77 ALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGR 136 d1tqja_ 117 --LNPSTPLDFLEYVLPV--CDLIL-----IMSVNPQSFIPEVLPKIRALRQMCDERGLD 167 :::::::::::::::: ::::: :::::::::::: :::::::::: :: d1gvfa_ 137 LGSAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKID-FQRLAEIREV-----VD 190 d1tqja_ 168 PWIEVDG--GLKPNNTWQVLEAGANAIVAGSAVFN 200 ::::::: :::::::::::::::::::::::::: d1gvfa_ 191 VPLVLHGASDVPDEFVRRTIELGVTKVNVATELKI 225