Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1gqna_ | Type I 3-dehydroquinate dehydratase | Aldolase | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 1.852 --> HitDALI alignment (Z-score: 13.4 Raw score:1257.50) d1tqja_ 1 -------------KNIVVAPSIL---saDFSRLGEEIKAVdeaGADWIHVDVMdgrfvpn 44 :::::::::: :::::::::::: :::::::::: d1gqna_ 1 mktvtvknliigeGMPKIIVSLMgrdinSVKAEALAYREA---TFDILEWRVDhfmdias 57 d1tqja_ 45 itiGPLIVDAIRPLT-KKTLDVHLMI-----------vEPEKYVEDFA-KAGADIISVHV 91 :::::::::::: :::::::::: :::::::::: ::::::::::: d1gqna_ 58 tqsVLTAARVIRDAMpDIPLLFTFRSakeggeqtittqHYLTLNRAAIdSGLVDMIDLEL 117 d1tqja_ 92 EhnASPH-LHRTLCQIRELGKKAGAVLNP-------sTPLDFLEYVLP-VCDLILIMSV- 141 : :::: ::::::::::::::::::::: ::::::::::: :::::::::: d1gqna_ 118 F--TGDAdVKATVDYAHAHNVYVVMSNHDfhqtpsaeEMVSRLRKMQAlGADIPKIAVMp 175 d1tqja_ 142 npqsfiPEVLPKIRALR-QMCDergldPWIEVDGG--lkpnnTWQVLEAGANAIVAgsaV 198 ::::::::::: :::: :::::::: :::::::::::::: : d1gqna_ 176 qskhdvLTLLTATLEMQqHYAD-----RPVITMSMakegvisRLAGEVFGSAATFG---A 227 d1tqja_ 199 FNAPN--yaEAIAGVR-NSKR---- 216 ::::: ::::::: :::: d1gqna_ 228 VKQASapgqIAVNDLRsVLMIlhna 252 FAST alignment (Normalized score: 10.13 Raw score:2363.00) d1tqja_ 1 -------------KNIVVAPSILS---ADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPN 44 :::::::: :::::::::::::::::::::::: d1gqna_ 1 MKTVTVKNLIIGEGMPKIIVS---LMGRDINSVKAEALAYREATFDILEWR--------- 48 d1tqja_ 45 ITI------------GPLIVDAIRPL-TKKTLDVHLMIV--------------EPEKYVE 77 ::::::::::: ::::::::: ::::::: d1gqna_ 49 ---VDHFMDIASTQSVLTAARVIRDAMPDIPLLFTF---RSAKEGGEQTITTQHYLTLNR 102 d1tqja_ 78 DFAK-AGADIISVHVEHNAS----PHLHRTLCQIRELGKKAGAVLNPST----------- 121 :::: :::::::::: ::::::::::::::::::::: d1gqna_ 103 AAIDSGLVDMIDLEL-----FTGDADVKATVDYAHAHNVYVVMSN----HDFHQTPSAEE 153 d1tqja_ 122 PLDFLEYVL-PVCDLILIMSVNPQSF--------IPEVLPKIRALRQMCDERGL---DPW 169 ::::::::: ::::::::: ::::::::::::: ::: d1gqna_ 154 MVSRLRKMQALGADIPKIA-------VMPQSKHDVLTLLTATLEMQQ-------HYADRP 199 d1tqja_ 170 IEVDGGLK-------PNNTWQVLEAGANAIVAGSAVFNAPNYAE------------AIAG 210 ::: :::::::::::::::: :::: d1gqna_ 200 VIT-----MSMAKEGVISRLAGEVFGSAATF-------------GAVKQASAPGQIAVND 241 d1tqja_ 211 VRNSKR--------- 216 :: d1gqna_ 242 LR----SVLMILHNA 252 TMalign alignment (TM-score: 0.71 Raw score:152.80) d1tqja_ 1 ------------KN-IVVAPSILSA--DFS-RLGEEIKAVDEAGADWIHVDVMDGRFVPN 44 :: :::::::::: ::: ::::::::: :::::::::: d1gqna_ 1 MKTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREA---TFDILEWRVD------- 50 d1tqja_ 45 ITI--G-----PL-IVDAIRPLT-KKTLDVHLMI---------VE--PEKYVEDFA-KAG 83 :: : :: ::::::::: :::::::::: :: ::::::::: ::: d1gqna_ 51 -HFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGL 109 d1tqja_ 84 ADIISVHVEHNASPH-LHRTLCQIRELGKKAGAVLNP---ST---PL-DFLEYVLP-VCD 134 ::::::::: :::: ::::::::::::::::::::: :: :: :::::::: ::: d1gqna_ 110 VDMIDLELF--TGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGAD 167 d1tqja_ 135 LILIMSVNPQSFIP-EVLPKIRALRQMCDERGLDPWIEVDGGLK-PNN-TWQVLEAGANA 191 ::::::: :::: ::::::::::::::::::::::::::::: :: ::::::::::: d1gqna_ 168 IPKIAVM---PQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEG-VISRLAGEVFGSAA 223 d1tqja_ 192 IVAGSAVFNAP----NYAEAIAGVRNS--KR--- 216 :::: ::::: ::::::::: :: d1gqna_ 224 TFGA--VKQASAPGQ---IAVNDLRSVLMILHNA 252 HHsearch alignment (Probability: 0.95 E-value:0.00) d1tqja_ 2 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHV--DVMDGRFVPNITIGPLIVDAIRPL- 58 ::::::::::::::::::::::::::::::::: :::::: :::::::::::::::: d1gqna_ 15 MPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDI--ASTQSVLTAARVIRDAM 72 d1tqja_ 59 TKKTLDVHLMIV--------EPEKYVE---DFAKAG-ADIISVHVEHNASPHLHRTLCQI 106 :::::::::::: ::::::: :::::: ::::::::::: ::::::::::: d1gqna_ 73 PDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTG-DADVKATVDYA 131 d1tqja_ 107 RELGKKAGAVLN--PSTPL-DFLEYVLP---VCD-LILIMSVNPQSFIPEVLPKIRALRQ 159 :::::::::::: ::::: :::::::: ::: :::::::::::::: :::::::::: d1gqna_ 132 HAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHD-VLTLLTATLE 190 d1tqja_ 160 M 160 : d1gqna_ 191 M 191