Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1n7ka_ | Deoxyribose-phosphate aldolase DeoC | Aldolase | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.149 --> HitDALI alignment (Z-score: 14.8 Raw score:1344.70) d1tqja_ 1 -------------------knIVVAPSILS-aDFSR-LGEEIKAVDEAGADWIHVDvmdg 39 ::::::::: :::: ::::::::::::::::::: d1n7ka_ 1 psardilqqgldrlgspedlaSRIDSTLLSprATEEdVRNLVREASDYGFRCAVLT---- 56 d1tqja_ 40 rfvpnitigPLIVDAIRPLT---KKTLDVHL---MIVE----PEKYVEDFAKAGADIISV 89 ::::::::::: :::::::: :::: :::::::::::::::::: d1n7ka_ 57 ---------PVYTVKISGLAeklGVKLCSVIgfpLGQAplevKLVEAQTVLEAGATELDV 107 d1tqja_ 90 HVEHN-----asPHLHRTLCQIRELGKKAGAVLNPSTP----LDFL-EYVLP-VCDLILI 138 ::::: :::::::::::::::::::::::::: :::: ::::: ::::::: d1n7ka_ 108 VPHLSlgpeavyREVSGIVKLAKSYGAVVKVILEAPLWddktLSLLvDSSRRaGADIVKT 167 d1tqja_ 139 MSVNPqsfipeVLPKIRALRQMCDerGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGsA 197 ::::: ::::::::::::: :::::::::::::: ::::::::::::::::: : d1n7ka_ 168 STGVY--tkggDPVTVFRLASLAK--PLGMGVKASGGIRSgIDAVLAVGAGADIIGTS-S 222 d1tqja_ 198 VFNapnyaeAIAGvrnskr 216 ::: :::: d1n7ka_ 223 AVK------VLES-fkslv 234 FAST alignment (Normalized score: 11.02 Raw score:2478.00) d1tqja_ 1 KNI----------------------VVAPSILSADFSR-----LGEEIKAVDE----AGA 29 :::::: :::::::::: ::: d1n7ka_ 1 ---PSARDILQQGLDRLGSPEDLASRIDSTL-------LSPRATEEDVRNLVREASDYGF 50 d1tqja_ 30 DWIHVDVMDGRFVPNITIGPLIVDAIRPL---TKKTLDVHLMIV-----------EPEKY 75 ::::: ::::::::::: :::::::: ::::: d1n7ka_ 51 RCAVL-------------TPVYTVKISGLAEKLGVKLCSV----IGFPLGQAPLEVKLVE 93 d1tqja_ 76 VEDFAKAGADIISVHVEHNASP------------HLHRTLCQIRELGKKAGAVL-NPSTP 122 ::::::::::::::: :::::::::::::::::::: ::::: d1n7ka_ 94 AQTVLEAGATELDVV-------PHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWD 146 d1tqja_ 123 LDFLEYVLP-----VCDLILIMSVNPQSFIPE----------VLPKIRALRQMCDERGLD 167 ::::::::: :::::: :::::::::::::: :: d1n7ka_ 147 DKTLSLLVDSSRRAGADIVK------------TSTGVYTKGGDPVTVFRLASLAKP--LG 192 d1tqja_ 168 PWIEVDGGL-KPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKR------- 216 ::::::::: ::::::::::::::::::: :::::: d1n7ka_ 193 MGVKASGGIRSGIDAVLAVGAGADIIGTS-----------SAVKVL----ESFKSLV 234 TMalign alignment (TM-score: 0.72 Raw score:155.18) d1tqja_ 1 ------------K-----NI--VVAPSILS-ADFSR-LGEEIKAVDEAGADWIHVDVMDG 39 : :: :::::::: ::::: :::::::::::::::::: : d1n7ka_ 1 PSARDILQQGLDRLGSPEDLASRIDSTLLSPRATEEDVRNLVREASDYGFRCAVL-T--- 56 d1tqja_ 40 RFVPNITIGPLIVDAIRPLT---KKTLDVHL-M--I-VE---PEKYVEDFAKAGADIISV 89 :: ::::::::: :::::::: : : :: :::::::::::::::::: d1n7ka_ 57 --------PV-YTVKISGLAEKLGVKLCSVIGFPLGQAPLEVKLVEAQTVLEAGATELDV 107 d1tqja_ 90 HV-EHNA--SP-H-LHRTLCQIRELGKKAGAVLN-PST----PLDFLEYVLP-VCDLILI 138 :: :::: :: : :::::::::::::::::::: ::: :::::::::: ::::::: d1n7ka_ 108 VPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKT 167 d1tqja_ 139 MSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSA 197 :::::: ::: ::::::::::::::: ::: ::::::::: ::::::::::::::::: : d1n7ka_ 168 STGVYT-KGG-DPVTVFRLASLAKPL-GMG-VKASGGIRSGIDAVLAVGAGADIIGTS-S 222 d1tqja_ 198 VFNAPNYAEAIAGVRNSK-R 216 : : ::::::::: d1n7ka_ 223 A-----V--KVLESFKSLV- 234 HHsearch alignment (Probability: 0.96 E-value:0.00) d1tqja_ 168 PWIEVDGGLKP-NNTWQVLEAGANAIVAG 195 ::::::::::: ::::::::::::::::: d1n7ka_ 193 MGVKASGGIRSGIDAVLAVGAGADIIGTS 221