Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1rzma_ | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) | Aldolase | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.250 --> HitDALI alignment (Z-score: 14.9 Raw score:1413.40) d1tqja_ 1 ------------------------------------------------------------ 1 d1rzma_ 1 mivvlkpgsteedirkvvklaesynlkchiskgqertvigiigddryvvadkfesldcve 60 d1tqja_ 1 --------------------------------KNIVVAPSIL-sadFSRLGEEIKAVDEA 27 :::::::::: :::::::::::::: d1rzma_ 61 svvrvlkpyklvsrefhpedtvidlgdvkignGYFTIIAGPCsvegREMLMETAHFLSEL 120 d1tqja_ 28 GADWIHVD-VMDGR-fvPNITIGPLIVDAIRPLT---KKTLDVHLMivePEKYVEDFAKa 82 :::::::: ::::: ::::::::::::::::: ::::::::: :::::::::: d1rzma_ 121 GVKVLRGGaYKPRTspySFQGLGEKGLEYLREAAdkyGMYVVTEAL---GEDDLPKVAE- 176 d1tqja_ 83 GADIISVHVEhnASPHlHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLP-------VCDL 135 :::::::::: :::: :::::::::::::::::::::::::::::::: :::: d1rzma_ 177 YADIIQIGAR--NAQN-FRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEyiansgnTKII 233 d1tqja_ 136 ILIMS----vnpQSFIPeVLPKIRALRQMCderglDPWIEVDGG-------lKPNNTWQV 184 ::::: ::::: :::::::::::: ::::::::: :::::::: d1rzma_ 234 LCERGirtfekaTRNTL-DISAVPIIRKES-----HLPILVDPShsggrrdlVIPLSRAA 287 d1tqja_ 185 LEAGANAIVAGS------------aVFNAPNYAEAIAGvRNSK--------r 216 :::::::::::: ::::::::::::: :::: d1rzma_ 288 IAVGAHGIIVEVhpepekalsdgkqSLDFELFKELVQE-MKKLadalgvkvn 338 FAST alignment (Normalized score: 8.71 Raw score:2353.00) d1tqja_ 1 ------------------------------------------------------------ 1 d1rzma_ 1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVE 60 d1tqja_ 1 --------------------------------KNIVVAPSILSAD------FSRLGEEIK 22 :::::::: ::::::::: d1rzma_ 61 SVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAG-----PCSVEGREMLMETAH 115 d1tqja_ 23 AVDEAGADWIHVDVMDGRFV---------PNITIGPLIVDAIRP---LTKKTLDVHLMIV 70 ::::::::::::: ::::::::::::::: ::::::::::: d1rzma_ 116 FLSELGVKVLRGG-------AYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEAL-- 166 d1tqja_ 71 EPEKYVEDFAKAGADIISVHVEHNASPH-LHRTLCQIRELGKKAGAVLNPSTPLDFLEYV 129 :::::::::: :::::::: :::: ::::::::::::::::::::::::::::::: d1rzma_ 167 -GEDDLPKVAE-YADIIQIG--ARNA--QNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLS 220 d1tqja_ 130 LPVC---------DLILIMSVNPQSFIPE-------------VLPKIRALRQMCDERGLD 167 :: :::::: :::::::::: ::: d1rzma_ 221 AE--YIANSGNTKIILCER----------GIRTFEKATRNTLDISAVPIIRK-----ESH 263 d1tqja_ 168 PWIEVDGGL-----------KPNNTWQVLEAGANAIVAGSAVFNA--------------- 201 ::::: :::::::::::::::::: d1rzma_ 264 LPILV----DPSHSGGRRDLVIPLSRAAIAVGAHGIIV-------EVHPEPEKALSDGKQ 312 d1tqja_ 202 ----PNYAEAIAGVRNSKR----------- 216 ::::::::::: d1rzma_ 313 SLDFELFKELVQEMK----KLADALGVKVN 338 TMalign alignment (TM-score: 0.75 Raw score:161.09) d1tqja_ 1 ------------------------------------------------------------ 1 d1rzma_ 1 MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVE 60 d1tqja_ 1 ------------------------------K--NIVVAPSILSADF-SRLGEEIKAVDEA 27 : ::::::::::::: ::::::::::::: d1rzma_ 61 SVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSEL 120 d1tqja_ 28 GADWIHVD-VMDGRFVP--N-ITIGPLIVDAIRPLT---KKTLDVHLMIVEPEKYVEDFA 80 :::::::: :::: :: : ::::::::::::::: :::::::: : ::::::::: d1rzma_ 121 GVKVLRGGAYKPR--TSPYSFQGLGEKGLEYLREAADKYGMYVVTEA-L--GEDDLPKVA 175 d1tqja_ 81 KAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDF-LE--YVLP----VC 133 : ::::::::::::::::::::::::: ::::::::::::::: :: :::: :: d1rzma_ 176 E-YADIIQIGARNAQNFRLLSKAGSYN---KPVLLKRGFMNTIEEFLLSAEYIANSGNTK 231 d1tqja_ 134 DLILIMSVN----PQSFIPEVLPKIRALRQMCDERGLDPWIEVD-G--G----LKPNNTW 182 ::::::::: :::::::::::::::::: : :::::: : : ::::::: d1rzma_ 232 IILCERGIRTFEK-ATRNTLDISAVPIIRKES----H-LPILVDPSHSGGRRDLVIPLSR 285 d1tqja_ 183 QVLEAGANAIVAGS------------AVFNAPNYAEAIAGVRNSK-R------ 216 :::::::::::::: ::::::::::::::::::: : d1rzma_ 286 AAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN 338 HHsearch alignment (Probability: 0.77 E-value:0.01) d1tqja_ 14 FSRLGEEIKAVDEAGADWIHVDVMDGRFVPNIT------IG---PLIVDAIRPLTKKTLD 64 ::::::::::::::::::: :::::::::: :: :::::::::::::::: d1rzma_ 107 REMLMETAHFLSELGVKVL----RGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVV 162 d1tqja_ 65 VHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLD 124 ::::::: :::::::: :::::::::::: : ::::::::::::::::::::::::: d1rzma_ 163 TEALGED---DLPKVAEY-ADIIQIGARNAQ--N-FRLLSKAGSYNKPVLLKRGFMNTIE 215 d1tqja_ 125 FLEYVL----PV--CDLILIMS-VN--PQSF-IPEVLPKIRALRQMCDERGLDPWIEVDG 174 :::::: :: :::::::: :: :::: :::::::::::::: ::::::::: d1rzma_ 216 EFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKE-----SHLPILVDP 270 d1tqja_ 175 ----GLK---PNNTWQVLEAGANAIVAGS 196 ::: ::::::::::::::::::: d1rzma_ 271 SHSGGRRDLVIPLSRAAIAVGAHGIIVEV 299