Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1vlia2 | Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain | Aldolase | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.257 --> HitDALI alignment (Z-score: 14.4 Raw score:1399.20) d1tqja_ 1 -------------KNIVVAPSILSADF---SRLGEEIKAVDEAGADWIHVDVMDGRF--- 41 :::::::::::::: ::::::::::::::::::::::::::: d1vlia2 1 aafqianktvgkdAPVFIIAEAGINHDgklDQAFALIDAAAEAGADAVKFQMFQADRmyq 60 d1tqja_ 42 ----------vpNITIgpLIVDAIRPLTK---KTLDVHLmivEPEKYVEDFAKAGADIIS 88 :::: ::::::::::: ::::::: :::::::::::::::::: d1vlia2 61 kdpdvsifslvqSMEMpaEWILPLLDYCRekqVIFLSTV---CDEGSADLLQSTSPSAFK 117 d1tqja_ 89 VHVEhnaSPHLHRTLCQIRELGKKAGAVLNpSTPLDFLEYVLPV-------cDLILIMSV 141 :::: ::::::::::::::::::::::: ::::::::::::: :::::::: d1vlia2 118 IASY---EINHLPLLKYVARLNRPMIFSTA-GAEISDVHEAWRTiraegnnqIAIMHCVA 173 d1tqja_ 142 NpQSFI--PEVLPKIRALRQMCDerglDPWIEVDGG--lKPNNTWQVLEAGANAIVAGS- 196 : :::: ::::::::::::::: ::::::::: :::::::::::::::::::: d1vlia2 174 K-YPAPpeYSNLSVIPMLAAAFP----EAVIGFSDHsehPTEAPCAAVRLGAKLIEKHFt 228 d1tqja_ 197 ------------AVFNApNYAEAIAGVRNSK---------------------------r 216 ::::: ::::::::::::: d1vlia2 229 idknlpgadhsfALNPD-ELKEMVDGIRKTEaelkqgitkpvsekllgssyktttaieg 286 FAST alignment (Normalized score: 9.66 Raw score:2400.00) d1tqja_ 1 -------------KNIVVAPS-ILSADF--SRLGEEIKAVDEAGADWIHVDVMDGRFVPN 44 :::::::: :::::: ::::::::::::::::::::::: d1vlia2 1 AAFQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMF------- 53 d1tqja_ 45 IT--------------------------IGPLIVDAIRPLTKKTLDVHLMIVE-PEKYVE 77 ::::::::::: ::::::::: :::::: d1vlia2 54 --QADRMYQKDPDVSIFSLVQSMEMPAEWILPLLDYCRE-KQVIFLSTV----CDEGSAD 106 d1tqja_ 78 DFAKAGADIISVHVEHNASPH-LHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVC--- 133 ::::::::::::: :::: :::::::::::::::::: :::::::::::::: d1vlia2 107 LLQSTSPSAFKIA--SYEI--NHLPLLKYVARLNRPMIFS-TAGAEISDVHEAWR--TIR 159 d1tqja_ 134 ------DLILIMSVNPQSFIPE-----------VLPKIRALRQMCDERG-LDPWIEVDGG 175 :::::: ::::::::::: :::::::: d1vlia2 160 AEGNNQIAIMHC----------VAKYPAPPEYSNLSVIPMLAAA-----FPEAVIGFS-- 202 d1tqja_ 176 L-----KPNNTWQVLEAGANAIVAGSAVFNAP--------------------NYAEAIAG 210 :::::::::::::::::: :::::::: d1vlia2 203 -DHSEHPTEAPCAAVRLGAKLIEK--------HFTIDKNLPGADHSFALNPDELKEMVDG 253 d1tqja_ 211 VRNSKR------------------------------- 216 :: d1vlia2 254 IR----KTEAELKQGITKPVSEKLLGSSYKTTTAIEG 286 TMalign alignment (TM-score: 0.74 Raw score:159.45) d1tqja_ 1 -------------KNIVVAPSILSADF-S--RLGEEIKAVDEAGADWIHVD-VMDGRFV- 42 :::::::::::::: : :::::::::::::::::::: ::::::: d1vlia2 1 AAFQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQ 60 d1tqja_ 43 ------------PNITIGPL-IVDAIRPLTK---KTLDVHLMIVEPEKYVEDFAKAGADI 86 :::::: :::::::::: ::::::: : ::::::::::::::: d1vlia2 61 KDPDVSIFSLVQ--SMEMPAEWILPLLDYCREKQVIFLSTV-C--DEGSADLLQSTSPSA 115 d1tqja_ 87 ISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLE---YVLP---V-CDLILIM 139 ::::::::::::::::::::: ::::::: ::::::::: :::: : ::::::: d1vlia2 116 FKIASYEINHLPLLKYVARLN---RPMIFST-AGAEISDVHEAWRTIRAEGNNQIAIMHC 171 d1tqja_ 140 SVNPQSF-IPEVLPKIRALRQMCDERGLDPWIEVDGGL-KPNNTWQVLEAGANAIVAGS- 196 ::::::: :::::::::::::::: ::::::::::: :::::::::::::::::::: d1vlia2 172 VAKYPAPPEYSNLSVIPMLAAAFP---EAVIGFSDHSEHPTEAPCAAVRLGAKLIEKHFT 228 d1tqja_ 197 -----------AVFNAPNYAEAIAGVRNS---------K-R----------------- 216 :::::::::::::::::: : : d1vlia2 229 IDKNLPGADHSFALNPDELKEMVDGIRKTEAELKQGITKPVSEKLLGSSYKTTTAIEG 286 HHsearch alignment (Probability: 0.75 E-value:0.00) d1tqja_ 12 ADFSRLGEEIKAVDEAGADWIHVDVMDGRF-------------VPNITIGPLIVDAIRPL 58 :::::::::::::::::::::::::::::: ::::::::::::::::: d1vlia2 28 GKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPDVSIFSLVQSMEMPAEWILPLLDY 87 d1tqja_ 59 TKKTLDVHLM--IVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAV 116 ::: :::::: ::: ::::::::::::::::::::::: :::::::::::::::::: d1vlia2 88 CRE-KQVIFLSTVCD-EGSADLLQSTSPSAFKIASYEIN---HLPLLKYVARLNRPMIFS 142 d1tqja_ 117 LNPST--PLDFLEYVLP---VCDLILIM--SVNPQSFIPEVLPKIRALRQMCDERGLDPW 169 ::::: :::::::::: :::::::: ::::::::::::::::::::::: ::: d1vlia2 143 TAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFP----EAV 198 d1tqja_ 170 IEV-DGGLKPNNTWQ-VLEAGANAIV 193 ::: ::::::::::: :::::::::: d1vlia2 199 IGFSDHSEHPTEAPCAAVRLGAKLIE 224