Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1a49a2 | Pyruvate kinase, N-terminal domain | Phosphoenolpyruvate/pyruvate domain | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.290 --> HitDALI alignment (Z-score: 15.6 Raw score:1491.50) d1tqja_ 1 ------------------------------kNIVVAPSIL-SADFsrlGEEIKAVDEAGA 29 ::::::::: :::: :::::::::::: d1a49a2 1 iqtqqlhaamadtflehmcrldidsapitarNTGIICTIGpASRS---VETLKEMIKSGM 57 d1tqja_ 30 DWIHVDVMdgrfvpniTIGPLIVDAIRPLTK---------------KTLDVHLMI----v 70 :::::::: ::::::::::::::: ::::::::: d1a49a2 58 NVARMNFS--------HGTHEYHAETIKNVRtatesfasdpilyrpVAVALDTKGpavse 109 d1tqja_ 71 EPEKYVEDFAKAGADIISV-HVEHnasPHLHRTLCQIR--ELGKKAGAVLNPSTPLDFLE 127 ::::::::::::::::::: :::: ::::::::::: :::::::::::::::::::: d1a49a2 110 KDIQDLKFGVEQDVDMVFAsFIRK--aADVHEVRKILGekGKNIKIISKIENHEGVRRFD 167 d1tqja_ 128 YVLPVCDLILIMSVN--pqsfIPEVLPKIRALRQMCDErgLDPWIEVDGGLK-------- 177 ::::::::::::::: ::::::::::::::::: :::::::::::: d1a49a2 168 EILEASDGIMVARGDlgieipAEKVFLAQKMIIGRCNR--AGKPVICATQMLesmikkpr 225 d1tqja_ 178 -----pNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVR-NSKR------------ 216 :::::::::::::::::::::::::::::::::: :::: d1a49a2 226 ptraegSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHlIAREaeaamfhrklfe 282 FAST alignment (Normalized score: 11.61 Raw score:2864.00) d1tqja_ 1 K-------------------------------NIVVAPSILSADFSR-----LGEEIKAV 24 :::::::: :::::::: d1a49a2 1 -IQTQQLHAAMADTFLEHMCRLDIDSAPITARNTGIICTI-------GPASRSVETLKEM 52 d1tqja_ 25 DEAGADWIHVDVMDGRFVPNI--TIGPLIVDAIRPLT----------------KKTLDVH 66 ::::::::::: ::::::::::::: ::::::: d1a49a2 53 IKSGMNVARMN----------FSHGTHEYHAETIKN-VRTATESFASDPILYRPVAVALD 101 d1tqja_ 67 LMIV-------EPEKYVEDFAKAGADIISVHVEHNASPH----LHRTLCQIRE------L 109 : ::::::::::::::::::: :::::::::: : d1a49a2 102 T---KGPAVSEKDIQDLKFGVEQDVDMVFA---------SFIRKAADVHEVRKILGEKGK 149 d1tqja_ 110 GKKAGAVLNPSTP------LDFLEYVLPVCDLILIMSVNPQSF--------IPEVLPKIR 155 ::::::: :::::::::::::::::: ::::::::: d1a49a2 150 NIKIISK------IENHEGVRRFDEILEASDGIMVAR------GDLGIEIPAEKVFLAQK 197 d1tqja_ 156 ALRQMCDERGLDPWIEVDGGL--------------KPNNTWQVLEAGANAIVAGSAVFNA 201 :::::::: :::::::::: ::::::::::::::::::::::::: d1a49a2 198 MIIGRCNR--AGKPVICATQ-MLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKG 254 d1tqja_ 202 PNYAEAIAGVRNSKR----------------- 216 ::::::::::: d1a49a2 255 DYPLEAVRMQH----LIAREAEAAMFHRKLFE 282 TMalign alignment (TM-score: 0.75 Raw score:162.04) d1tqja_ 1 ------------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGAD 30 :::::::::::::: :::::::::::::: d1a49a2 1 IQTQQLHAAMADTFLEHMCRLDIDSAPITARNTGIICTIGPASR--SVETLKEMIKSGMN 58 d1tqja_ 31 WIHVDVMDGRFVPNITIG--PLIVDAIRPL-T-----------KKTLDVHLMI--VE--P 72 ::::::: :::: :::::::::: : :::::::::: :: : d1a49a2 59 VARMNFS-------HGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPAVSEKD 111 d1tqja_ 73 EKYVEDFAKAGADIISVH-VEHNASPHLHRTLCQIRE-L-GKKAGAVLNPSTPLDFLEYV 129 :::::::::::::::::: ::: ::::::::::::: : :::::::::::::::::::: d1a49a2 112 IQDLKFGVEQDVDMVFASFIRK--AADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEI 169 d1tqja_ 130 LPVCDLILIMSVNPQS---FIPEVLPKIRALRQMCDERGLDPWIEVDGGLK--------- 177 :::::::::::::::: ::::::::::::::::: :::::::::::: d1a49a2 170 LEASDGIMVARGDLGIEIP-AEKVFLAQKMIIGRCNR--AGKPVICATQMLESMIKKPRP 226 d1tqja_ 178 ---PN-NTWQVLEAGANAIVAGSAV--FNAPNY-AEAIAGVRNSK--R-------- 216 :: ::::::::::::::::::: :::::: ::::::::::: : d1a49a2 227 TRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAMFHRKLFE 282 HHsearch alignment (Probability: 0.96 E-value:0.00) d1tqja_ 1 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTK 60 :::::::::::::: :::::::::::::::::::::::: :::::::::::::::: d1a49a2 31 RNTGIICTIGPASR--SVETLKEMIKSGMNVARMNFSHGT----HEYHAETIKNVRTATE 84 d1tqja_ 61 KT-------LDVHLMI--------VEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQ 105 :: ::::::: ::::::::::::::::::::::: :::::::::::: d1a49a2 85 SFASDPILYRPVAVALDTKGPAVSEKDIQDLKFGVEQDVDMVFASFI-RKAADVHEVRKI 143 d1tqja_ 106 IRELGKKAGAVLNPST--PLDFLEYVLPVCDLILI----MSVNPQSFIPEVLPKIRALRQ 159 :::::::::::::::: ::::::::::::::::: :::::: ::::::::::::: d1a49a2 144 LGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIP--AEKVFLAQKMIIG 201 d1tqja_ 160 MCDERGLDPWIEVDGGLKPN-------------NTWQVLEAGANAIVAGSAVFNAPNYAE 206 :::::::: :::::::::: ::::::::::::::::::::::::::: d1a49a2 202 RCNRAGKP--VICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLE 259 d1tqja_ 207 AIAGVRNS 214 :::::::: d1a49a2 260 AVRMQHLI 267