Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1nsja_ | N-(5'phosphoribosyl)antranilate isomerase, PRAI | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.402 --> HitDALI alignment (Z-score: 17.6 Raw score:1480.80) d1tqja_ 1 kNIVVAPSILsadfsrLGEEIKAVDEAGADWIHVDVMDGrfvpNITI-GPLIVDAIRPLT 59 ::::::::: ::::::::::::::::::::::: :::: :::::::::::: d1nsja_ 1 -MVRVKICGI-----tNLEDALFSVESGADAVGFVFYPK----SKRYiSPEDARRISVEL 50 d1tqja_ 60 K--KTLDVHLmIVEPEKYVEDFAK-AGADIISVHvehnASPHlHRTLCQIRELgKKAGAV 116 : ::::::: ::::::::::::: ::::::::: :::: :::::::::: :::::: d1nsja_ 51 PpfVFRVGVF-VNEEPEKILDVASyVQLNAVQLH----GEEP-IELCRKIAER-ILVIKA 103 d1tqja_ 117 LNPST--PLDFLEYVLPvcDLILIMSVN---PQSF-IPEVLPKiRALRQMCdergldPWI 170 ::::: :::::::::: ::::::::: :::: ::::::: ::::::: ::: d1nsja_ 104 VGVSNerDMERALNYRE--FPILLDTKTpeyGGSGkTFDWSLI-LPYRDRF------RYL 154 d1tqja_ 171 EVDGGLKPNNTWQVLE-AGANAIVAGSAV------FNAPNYAEAIAGVRNskr 216 :::::::::::::::: :::::::::::: ::::::::::::::: d1nsja_ 155 VLSGGLNPENVRSAIDvVRPFAVDVSSGVeafpgkKDHDSIKMFIKNAKG--l 205 FAST alignment (Normalized score: 11.47 Raw score:2414.00) d1tqja_ 1 KNIVVAPSILSADFSR----LGEEIKAVDEAGADWIHVDVMDGR-FVPNITIGPLIVDAI 55 :::::: ::::::::::::::::::::: :::: :::::::::: d1nsja_ 1 -MVRVKI---------CGITNLEDALFSVESGADAVGFVFY---PKSKR-YISPEDARRI 46 d1tqja_ 56 RPLT---KKTLDVHLMIVE---PEKYVEDFA-KAGADIISVHVEHNASPH----LHRTLC 104 ::: :::::::: ::::::::: ::::::::: :::::: d1nsja_ 47 SVE-LPPFVFRVGVF----VNEEPEKILDVASYVQLNAVQL---------HGEEPIELCR 92 d1tqja_ 105 QIRELGKKAGAVLNPST------PLDFLEYVLPVCDLILIMSVNPQSFIPE--------- 149 :::: :::::::: :::::::::: ::::::::: d1nsja_ 93 KIAE-RILVIKAV----GVSNERDMERALNYRE--FPILLDTKT-------PEYGGSGKT 138 d1tqja_ 150 -VLPKIRALRQMCDERGLD--PWIEVDGGLKPNNTWQVLE-AGANAIVAGSAVFNAPN-- 203 :::::::::: ::::::::::::::::::: :::::::::::: d1nsja_ 139 FDWSLILPYRD--------RFRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGV-----EA 185 d1tqja_ 204 -----YAEAIAGVRNSKR------ 216 ::::::::: d1nsja_ 186 FPGKKDHDSIKMFI----KNAKGL 205 TMalign alignment (TM-score: 0.73 Raw score:157.99) d1tqja_ 1 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT- 59 ::::::::: : ::::::::::::::::::::::: ::::::::::::::::: d1nsja_ 1 -MVRVKICGI---T--NLEDALFSVESGADAVGFVFYPK---SKRYISPEDARRISVELP 51 d1tqja_ 60 K-KTLDVHLMIVEPEKYVEDFAK-AGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVL 117 : ::::::: ::::::::::::: ::::::::::: : ::::::::::: ::::::: d1nsja_ 52 PFVFRVGVF-VNEEPEKILDVASYVQLNAVQLHGE---E--PIELCRKIAER-ILVIKAV 104 d1tqja_ 118 NPS--TPLDFLEYVLPVCDLILIMSV---NPQSFIPEVLPKIRALRQMCDERGLDPWIEV 172 ::: ::::::::::: : ::::::: :::::::::::::::::::: :: ::: d1nsja_ 105 GVSNERDMERALNYRE-F-PILLDTKTPEYGGSGKTFDWSLILPYRDRF-----RY-LVL 156 d1tqja_ 173 DGGLKPNNTWQVL-EAGANAIVAG-SAV-----FNAPNYAEAIAGVRNSKR 216 ::::::::::::: :::::::::: ::: :::::::::::::::: d1nsja_ 157 SGGLNPENVRSAIDVVRPFAVDVSSGVEAFPGKKDHDSIKMFIKNAKGL-- 205 HHsearch alignment (Probability: 0.97 E-value:0.00) d1tqja_ 18 GEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKT-LDVHLMIVEPEKY- 75 ::::::::::::::::::::::: : :::::::::::::::::: ::::::::::::: d1nsja_ 12 LEDALFSVESGADAVGFVFYPKS--K-RYISPEDARRISVELPPFVFRVGVFVNEEPEKI 68 d1tqja_ 76 VEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST--PLDFLEYVLPVC 133 ::::::::::::::::: :: :::::::::: ::::::::::: :::::::: :: d1nsja_ 69 LDVASYVQLNAVQLHGE--EP---IELCRKIAER-ILVIKAVGVSNERDMERALNY--RE 120 d1tqja_ 134 DLILIMSVNP------QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLE- 186 :::::::::: :::::::::::::: :::::::::::::::::::: d1nsja_ 121 FPILLDTKTPEYGGSGKTFDWSLILPYRDR---------FRYLVLSGGLNPENVRSAIDV 171 d1tqja_ 187 AGANAIVAGSAVFNAP---NYAEAIAGVRN 213 :::::::::::::::: :::: :::::: d1nsja_ 172 VRPFAVDVSSGVEAFPGKKDHDS-IKMFIK 200