Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1tx2a_ | Dihydropteroate synthetase | Dihydropteroate synthetase-like | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.409 --> HitDALI alignment (Z-score: 14.3 Raw score:1362.50) d1tqja_ 1 ----------------KNIVVAPSIL-----------sadFSRLGEEIKAVDEAGADWIH 33 :::::::::: :::::::::::::::::::: d1tx2a_ 1 kwdydlrcgeytlnlnEKTLIMGILNvtpdsfsdggsyneVDAAVRHAKEMRDEGAHIID 60 d1tqja_ 34 VDVMDgrfVPNI------tIGPLIVDAIRPLTKKTLDVHLmivePEKYVEDFAKAGADII 87 ::::: :::: ::::::::::::::::::::: :::::::::::::::: d1tx2a_ 61 IGGES---FAKVsveeeikRVVPMIQAVSKEVKLPISIDT---yKAEVAKQAIEAGAHII 114 d1tqja_ 88 SVHVehnaSPHLhRTLCQIRELGKKAGAVLN---------pstPLDFLEYVLPV------ 132 :::: :::: :::::::::::::::::: ::::::::::: d1tx2a_ 115 NDIW--gaKAEP-KIAEVAAHYDVPIILMHNrdnmnyrnlmadMIADLYDSIKIakdagv 171 d1tqja_ 133 ---CDLILIMSVN--pqsfIPEVLPKIRALRQMCdergldPWIEVDGG------------ 175 :::::::::: ::::::::::::::: :::::::: d1tx2a_ 172 rdeNIILDPGIGFaktpeqNLEAMRNLEQLNVLG------YPVLLGTSrksfighvldlp 225 d1tqja_ 176 ------lKPNNTWQVLEAGANAIVAGSavfnapnYAEAIAGVRNSK----r 216 :::::::::::::::::::: :::::::::::: d1tx2a_ 226 veerlegTGATVCLGIEKGCEFVRVHD-------VKEMSRMAKMMDamigk 269 FAST alignment (Normalized score: 10.20 Raw score:2458.00) d1tqja_ 1 ----------------KNIVVAPSILSAD----------------FSRLGEEIKAVDEAG 28 :::::::: ::::::::::::::: d1tx2a_ 1 KWDYDLRCGEYTLNLNEKTLIMGI-----LNVTPDSFSDGGSYNEVDAAVRHAKEMRDEG 55 d1tqja_ 29 ADWIHVDVMDGRFVPNITI---------------GPLIVDAIRPLTKKTLDVHLMIVEPE 73 ::::::: ::::::::::::::::::::: :: d1tx2a_ 56 AHIIDIG------------GESFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTY---KA 100 d1tqja_ 74 KYVEDFAKAGADIISVHVEHNASPH------LHRTLCQIRELGKKAGAVLNPST------ 121 :::::::::::::::: :::::::::::::::::: d1tx2a_ 101 EVAKQAIEAGAHIIND---------IWGAKAEPKIAEVAAHYDVPIILM-----HNRDNM 146 d1tqja_ 122 --------PLDFLEYVLPVC-----------DLILIMSVNPQSF--------IPEVLPKI 154 :::::::::: ::::::: :::::::: d1tx2a_ 147 NYRNLMADMIADLYDSIK--IAKDAGVRDENIILDPGI------GFAKTPEQNLEAMRNL 198 d1tqja_ 155 RALRQMCDERGLDPWIEVDGGL---------------------KPNNTWQVLEAGANAIV 193 ::::: :::::::: ::::::::::::::::: d1tx2a_ 199 EQLNV------LGYPVLLG---TSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVR 249 d1tqja_ 194 AGSAVFNAPNYAEAIAGVRNSKR-------- 216 :: :::::::::: d1tx2a_ 250 VH-------DVKEMSRMAK----MMDAMIGK 269 TMalign alignment (TM-score: 0.71 Raw score:154.19) d1tqja_ 1 --------------K--NIVVAPSILSA----------DF-SRLGEEIKAVDEAGADWIH 33 : ::::::::::: :: ::::::::::::::::::: d1tx2a_ 1 KWDYDLRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIID 60 d1tqja_ 34 VDVMD--GR----FVPNIT-IGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADI 86 ::::: :: :: ::::::::::::::::::::: : ::::::::::::::: d1tx2a_ 61 IGGESFAKVSVEE----EIKRVVPMIQAVSKEVKLPISIDT-Y--KAEVAKQAIEAGAHI 113 d1tqja_ 87 ISV-HVEHNASPHLHRTLCQIRELGKKAGAVLNP--S-------TPLDFLEY-VL--P-- 131 ::: :::: :: : ::::::::::::::::::: : :::::::: :: : d1tx2a_ 114 INDIWGAK-AE-P--KIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDA 169 d1tqja_ 132 -V---CDLILIMSVNP--QSF-IPEVLPKIRALRQMCDERGLDPWIEVDGGL-------- 176 : ::::::::::: :: ::::::::::::::: ::::::::: d1tx2a_ 170 GVRDENIILDPGIGFAKT-PEQNLEAMRNLEQLNVLG------YPVLLGTSRKSFIGHVL 222 d1tqja_ 177 ----------KPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNS--KR-- 216 ::::::::::::::::::: :: : ::::::::: :: d1tx2a_ 223 DLPVEERLEGTGATVCLGIEKGCEFVRVH-DV-----K-EMSRMAKMMDAMIGK 269 HHsearch alignment (Probability: 0.69 E-value:0.00) d1tqja_ 12 ADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNI-TI--GPLIVDAIRPLTKKTLDVHLM 68 :::::::::::::::::::::::::::::::::: :: :::::::::::::: ::: d1tx2a_ 39 NEVDAAVRHAKEMRDEGAHIIDIGGESFAKVSVEEEIKRVVPMIQAVSKEVKL----PIS 94 d1tqja_ 69 IVEPE-KYVEDFAKAGADIIS-VHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTP 122 ::::: ::::::::::::::: :: :::::::::::::::::::::::::::: d1tx2a_ 95 IDTYKAEVAKQAIEAGAHIINDIW----GAKAEPKIAEVAAHYDVPIILMHNRDNM 146