Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1jr1a1 | Inosine monophosphate dehydrogenase (IMPDH) | Inosine monophosphate dehydrogenase (IMPDH) | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.436 --> HitDALI alignment (Z-score: 11.8 Raw score:1294.60) d1tqja_ 1 --------------------------------------------kNIVVAPS-ILSAdfs 15 ::::::: :::: d1jr1a1 1 gltaqqlfncgdgltyndflilpgyidftadqvdltsaltkkitlKTPLVSSpMDTV--- 57 d1tqja_ 16 rlgEEIKAVDEaGADWIHVDVMDgrfvpnitIGPLIVDAIRPL-----------tKKTLD 64 :::::::: ::::::::::: :::::::::::: ::::: d1jr1a1 58 teaGMAIAMAL-TGGIGFIHHNC-----tpeFQANEVRKVKKYeqyplaskdakkQLLCG 111 d1tqja_ 65 VHLMIVE-PEKYVEDFAKAGADIISV---HVEHnasPHLHRTLCQIRELG--KKAGAVLn 118 ::::::: :::::::::::::::::: :::: :::::::::::::: ::::::: d1jr1a1 112 AAIGTHEdDKYRLDLLALAGVDVVVLdssQGNS---IFQINMIKYMKEKYpnLQVIGGN- 167 d1tqja_ 119 psTPLDFLEYVLP-VCDLILIMSvNPQS---------fipEVLPKIRALRQMCDErgLDP 168 ::::::::::: ::::::::: :::: ::::::::::::::: ::: d1jr1a1 168 -vVTAAQAKNLIDaGVDALRVGM-GCGSicitqevlacgrPQATAVYKVSEYARR--FGV 223 d1tqja_ 169 WIEVDGGLKPNN-TWQVLEAGANAIVAGSAVFNA-------------------------- 201 :::::::::::: ::::::::::::::::::::: d1jr1a1 224 PVIADGGIQNVGhIAKALALGASTVMMGSLLAATteapgeyffsdgirlkkyrgmgslda 283 d1tqja_ 202 ---------------PNYAEAIAGVR-NSKR----------------------------- 216 ::::::::::: :::: d1jr1a1 284 mikvaqgvsgavqdkGSIHKFVPYLIaGIQHscqdigaksltqvrammysgelkfekrts 343 d1tqja_ 217 ------------------- 217 d1jr1a1 344 saqveggvhslhsyekrlf 362 FAST alignment (Normalized score: 9.25 Raw score:2587.00) d1tqja_ 1 KNI-----------------------------------------------VVAPSILSAD 13 ::::: d1jr1a1 1 ---GLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSS----- 52 d1tqja_ 14 FSR------LGEEIKAVDEAGADWIHVDVMDGRFVPNITI------GPLIVDAIRPLT-- 59 :::::::::::: ::::::: :::::::::::: d1jr1a1 53 ---PMDTVTEAGMAIAMALTG-GIGFIHH-----------NCTPEFQANEVRKVKKYEQY 97 d1tqja_ 60 ---------KKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVEHNAS------PHLHRTL 103 ::::::::::: :::::::::::::::::::: ::::::: d1jr1a1 98 PLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLD------SSQGNSIFQINMI 151 d1tqja_ 104 CQIRE--LGKKAGAVLNPS---TPLDFLEYVLP-VCDLILIMSVNPQSFIP--------- 148 ::::: ::::::: ::::::::::: :::::: d1jr1a1 152 KYMKEKYPNLQVIG-----GNVVTAAQAKNLIDAGVDALR-----------VGMGCGSIC 195 d1tqja_ 149 ----------EVLPKIRALRQMCDERGLDPWIEVDGGL-KPNNTWQVLEAGANAIVAGSA 197 ::::::::::::::: ::::::::::: ::::::::::::::::::::: d1jr1a1 196 ITQEVLACGRPQATAVYKVSEYARR--FGVPVIADGGIQNVGHIAKALALGASTVMMGSL 253 d1tqja_ 198 VFN-----------------------------------------APNYAEAIAGVRNSKR 216 ::: :::::::::::: d1jr1a1 254 LAATTEAPGEYFFSDGIRLKKYRGMGSLDAMIKVAQGVSGAVQDKGSIHKFVPYLI---- 309 d1tqja_ 217 ----------------------------------------------------- 217 d1jr1a1 310 AGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQVEGGVHSLHSYEKRLF 362 TMalign alignment (TM-score: 0.71 Raw score:153.93) d1tqja_ 1 ----------------------------------KNI----------VVAPSI--LSADF 14 ::: :::::: ::: : d1jr1a1 1 GLTAQQLFNCGDGLTYNDFLILPGYIDFTADQVDLTSALTKKITLKTPLVSSPMDTVT-E 59 d1tqja_ 15 SRLGEEIKAVDEAGADWIHVDVMD---GRFVPNITIGPLIVDAIRPLT-----------K 60 :: ::::::: ::::::::::: ::::::::::::: : d1jr1a1 60 --AG-MAIAMAL-TGGIGFIHHNCTPE--------FQANEVRKVKKYEQYPLASKDAKKQ 107 d1tqja_ 61 KTLDVHLMIVE--PEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRE-L-GKKAGAV 116 ::::::: ::: ::::::::::::::::::::::::::::::::::::: : ::::::: d1jr1a1 108 LLCGAAI-GTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGG 166 d1tqja_ 117 LNPSTPLDFLEYVLP-VCDLILIMSVNPQSF--------IPEVLPKIRALRQMCDERGLD 167 :: ::::::::::: ::::::::::::::: :::::::::::::::: ::: d1jr1a1 167 NV--VTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYAR--RFG 222 d1tqja_ 168 PWIEVDGGL-KPNNTWQVLEAGANAIVAGSAV--F------------------------- 199 ::::::::: :::::::::::::::::::::: : d1jr1a1 223 VPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLD 282 d1tqja_ 200 ---------------NAP--NYAEAIAGVRNSK---R----------------------- 216 ::: ::::::::::::: : d1jr1a1 283 AMIKVAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRT 342 d1tqja_ 217 -------------------- 217 d1jr1a1 343 SSAQVEGGVHSLHSYEKRLF 362 HHsearch alignment (Probability: 0.96 E-value:0.00) d1tqja_ 73 EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLP- 131 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: d1jr1a1 121 KYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDA 180 d1tqja_ 132 VCDLILIMSVNPQS---------FIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNT 181 ::::::: :::::: :::::::::::::::: ::::::::::::::: ::: d1jr1a1 181 GVDALRV-GMGCGSICITQEVLACGRPQATAVYKVSEYA--RRFGVPVIADGGIQNVGHI 237 d1tqja_ 182 WQVLEAGANAIVAGSAVFNA 201 :::::::::::::::::::: d1jr1a1 238 AKALALGASTVMMGSLLAAT 257