Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1o4ua1 | Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain | Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.456 --> HitDALI alignment (Z-score: 9.5 Raw score:787.10) d1tqja_ 1 ------------kNIVVAPSILsADFSRLGEEIKAVDEAGADwihvdvmdgrfvpnitig 48 ::::::::: ::::::::::::::::::: d1o4ua1 1 vatttrrfaeklkHAKIAATRK-ILPGLGVLQKIAVVHGGGD------------------ 41 d1tqja_ 49 plivdairpltkktldvhlmivepekyvedfakagadIISVHVehNASP---HLHRTLCQ 105 :::::: :::: :::::::: d1o4ua1 42 -------------------------------------CVMIKD--NHLKmygSAERAVQE 62 d1tqja_ 106 IRELG---KKAGAVLNpstPLDFLEYVLP-VCDLILIMSvnpqsfipeVLPKIRALRQMC 161 ::::: :::::::: :::::::::: ::::::::: :::::::::::: d1o4ua1 63 VRKIIpftTKIEVEVE---NLEDALRAVEaGADIVMLDN--------lSPEEVKDISRRI 111 d1tqja_ 162 DERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGsAVFNAPNyaeaiagvrnskr 216 :::::::::::::::::::::::::::::::::: ::::::: d1o4ua1 112 KDINPNVIVEVSGGITEENVSLYDFETVDVISSS-RLTLQEV---fvdlsleiqr 162 FAST alignment (Normalized score: 7.94 Raw score:1486.00) d1tqja_ 1 K-------------NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITI 47 ::::::: :::::::::::::::::::: d1o4ua1 1 -VATTTRRFAEKLKHAKIAAT-RKILPGLGVLQKIAVVHGGG------------------ 40 d1tqja_ 48 GPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGAD-IISVHVEHNAS---PHLHRTL 103 ::::: :::: ::::::: d1o4ua1 41 --------------------------------------DCVMIK--DNHLKMYGSAERAV 60 d1tqja_ 104 CQIRE---LGKKAGAVLNPSTPLDFLEYVLP-VCDLILIMSVNPQSFIPE---VLPKIRA 156 ::::: ::::::::: ::::::::::: ::::::: ::::::: d1o4ua1 61 QEVRKIIPFTTKIEVEV---ENLEDALRAVEAGADIVML-----------DNLSPEEVKD 106 d1tqja_ 157 LRQMCDERG--LDPWIEVDGGLKPNNTWQVLE--AGANAIVAGSAVFNAPNYAEAIAGVR 212 ::::::: ::::::::::::::::::: :::::::: :::::: d1o4ua1 107 ISRRIKD--INPNVIVEVSGGITEENVSLY--DFETVDVISS-SRLTLQ----------- 150 d1tqja_ 213 NSKR------------ 216 d1o4ua1 151 ----EVFVDLSLEIQR 162 TMalign alignment (TM-score: 0.51 Raw score:110.26) d1tqja_ 1 -------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITI 47 ::::::::::: ::::::::::::::::: d1o4ua1 1 VATTTRRFAEKLK-HAKIAATRKIL-PGLGVLQKIAVVHGGGD----------------- 41 d1tqja_ 48 GPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIR 107 ::::::::::::::::::::::: d1o4ua1 42 -------------------------------------CVMIKDNHLKMYGSAERAVQEVR 64 d1tqja_ 108 E-LG--KKAGAVLNPSTPLDFLEYVLP-VCDLILIMSVNPQSFIPEVLPKIRALRQMCDE 163 : :: :::::::: :::::::::: ::::::::: : :::::::::::::: d1o4ua1 65 KIIPFTTKIEVEVE---NLEDALRAVEAGADIVMLDN------L--SPEEVKDISRRIKD 113 d1tqja_ 164 RGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVF-N-APN--------YAEAIAGVRN 213 ::::::::::::::::::::::::::::::::: :: : ::: d1o4ua1 114 INPNVIVEVSGGITEENVSLYDFETVDVISSSR-LTLQEVFVDLSLEIQR---------- 162 d1tqja_ 214 SKR 216 d1o4ua1 163 --- 163 HHsearch alignment (Probability: 0.99 E-value:0.00) d1tqja_ 74 KYVEDFA--KAGADIISV---HVEHNASPHLHRTLCQIRELG-KKAGAVLNPSTPLDFLE 127 ::::::: ::::::::: :::::: ::::::::::::: ::::::::::::::::: d1o4ua1 28 GVLQKIAVVHGGGDCVMIKDNHLKMYG--SAERAVQEVRKIIPFTTKIEVEVENLEDALR 85 d1tqja_ 128 YVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEA 187 :::::::::::::::: :::::::::::::::::::::::::::::::::::: d1o4ua1 86 AVEAGADIVMLDNLSP--------EEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFE 137 d1tqja_ 188 GANAIVAGSAVFNAPN 203 :::::::::::::::: d1o4ua1 138 TVDVISSSRLTLQEVF 153