Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1vlwa_ | KDPG aldolase | Aldolase | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.473 --> HitDALI alignment (Z-score: 16.5 Raw score:1394.50) d1tqja_ 1 ---------KNIVVAPSILsadFSRLGEEIKAVDEAGADWIHVDVMdgrfvpniTIGPLI 51 :::::::::: :::::::::::::::::::::::: :::::: d1vlwa_ 1 hhmkmeelfKKHKIVAVLRansVEEAKEKALAVFEGGVHLIEITFT-------vPDADTV 53 d1tqja_ 52 VDAIRPLT--KKTLDVHLMIvePEKYVEDFAKAGADIISVHVehnasphLHRTLCQIREL 109 :::::::: :::::::::: :::::::::::::::::::: ::::::::::: d1vlwa_ 54 IKELSFLKekGAIIGAGTVT--SVEQCRKAVESGAEFIVSPH------lDEEISQFCKEK 105 d1tqja_ 110 GKKAGAVLNpstPLDFLEYVL-PVCDLILIMSvnpqsfIPEVLPKIRALRQMCDerglDP 168 ::::::::: ::::::::: :::::::::: :::::::::::::::: :: d1vlwa_ 106 GVFYMPGVM---TPTELVKAMkLGHTILKLFP-----gEVVGPQFVKAMKGPFP----NV 153 d1tqja_ 169 WIEVDGGLKPNNTWQVLEAGANAIVAGSAVFN------aPNYAEAIAGvRNSKr 216 :::::::::::::::::::::::::::::::: ::::::::: :::: d1vlwa_ 154 KFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKgtpdevrEKAKAFVEK-IRGC- 205 FAST alignment (Normalized score: 12.14 Raw score:2554.00) d1tqja_ 1 KNI------------VVAPSILSA----DFSRLGEEIKAVDEAGADWIHVDVMDGRFVPN 44 ::::: ::::::::::::::::::::::: d1vlwa_ 1 ---HHMKMEELFKKHKIVAV----LRANSVEEAKEKALAVFEGGVHLIEIT--------- 44 d1tqja_ 45 ITI-----GPLIVDAIRP--LTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASP 97 :::::::::: :::::::: :::: :::::::::::::::::: d1vlwa_ 45 ---FTVPDADTVIKELSFLKEKGAIIGA-GTVT-SVEQCRKAVESGAEFIVS-------- 91 d1tqja_ 98 H---LHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLP-VCDLILIMSVNPQSFIPE---- 149 ::::::::::::::::::: ::::::::::: ::::::: d1vlwa_ 92 -PHLDEEISQFCKEKGVFYMPGV---MTPTELVKAMKLGHTILKL-----------FPGE 136 d1tqja_ 150 --VLPKIRALRQMCDERG-LDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAP---N 203 ::::::::::: :::::::::::::::::::::::::::::::::::: : d1vlwa_ 137 VVGPQFVKAMKGP-----FPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKG-TPDE 190 d1tqja_ 204 YAEAIAGVRNSKR------ 216 ::::::::: d1vlwa_ 191 VREKAKAFV----EKIRGC 205 TMalign alignment (TM-score: 0.71 Raw score:153.17) d1tqja_ 1 ---------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITI-GPL 50 ::::::::::::::::::::::::::::::::::::: :: ::: d1vlwa_ 1 HHMKMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFT--------VPDADT 52 d1tqja_ 51 IVDAIRPLT--KKTLDVHLMIVEPEKYVEDFAKAGADIISV-HVEHNASPHLHRTLCQIR 107 ::::::::: :::::::::: :::::::::::::::::: :: : : ::::::: d1vlwa_ 53 VIKELSFLKEKGAIIGAGTVT--SVEQCRKAVESGAEFIVSPHL----D--E-EISQFCK 103 d1tqja_ 108 ELGKKAGAVLNPSTPLDFLEYVLP-VCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGL 166 :::::::::: ::::::::::: :::::::::: :: :::::::::::::: : d1vlwa_ 104 EKGVFYMPGV---MTPTELVKAMKLGHTILKLFPG----EV-VGPQFVKAMKGPFP---N 152 d1tqja_ 167 DPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVF-N---AP-NYAEAIAGVRNSKR 216 :: :::::::::::::::::::::::::::::: : :: ::::::::::::: d1vlwa_ 153 VK-FVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC- 205 HHsearch alignment (Probability: 0.99 E-value:0.00) d1tqja_ 1 KNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTK 60 ::::::::::::::::::::::::::::::::::::::::: :::::::::::: d1vlwa_ 10 KKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDA-------DTVIKELSFLKE 62 d1tqja_ 61 KTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS 120 :::::::::::::::::::::::::::::::: : ::::::::::::: :::::: d1vlwa_ 63 KGAIIGAGTVTSVEQCRKAVESGAEFIVSPHL---D---EEISQFCKEKGVF--YMPGVM 114 d1tqja_ 121 TPLDFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNN 180 ::::::::::::::::::::::::::: ::::::: ::::::::::::::::: d1vlwa_ 115 TPTELVKAMKLGHTILKLFPGEVVGPQ-----FVKAMKG----PFPNVKFVPTGGVNLDN 165 d1tqja_ 181 TWQVLEAGANAIVAGSAVFNA--PNYAEAIAGVRNSKR 216 ::::::::::::::::::::: ::::::::::::::: d1vlwa_ 166 VCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIR 203