Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1o1za_ | Hypothetical protein TM1621 | PLC-like phosphodiesterases | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.479 --> HitDALI alignment (Z-score: 12.4 Raw score:1133.40) d1tqja_ 1 --kNIVVAPSI--LSADFsrLGEEIKAVDEAGADWIHVDVMdgrfvpnitiGPLI----- 51 :::::::: ::::: ::::::::::::::::::::: :::: d1o1za_ 1 hhhHVIVLGHRgySAKYLenTLEAFMKAIEAGANGVELDVR-----lskdgKVVVshded 55 d1tqja_ 52 -----------------------------VDAIRPLTK--KTLDVHLMivePEKYVEDFA 80 ::::::::: :::::::: ::::::::: d1o1za_ 56 lkrlfgldvkirdatvselkeltdgkittLKEVFENVSddKIINIEIK---EREAADAVL 112 d1tqja_ 81 KAG----aDIISVHvehnasphLHRTLC-QIRElgKKAGAVLNpSTPLD---FLEYVL-- 130 ::: :::::: :::::: :::: :::::::: ::::: :::::: d1o1za_ 113 EISkkrknLIFSSF--------DLDLLDeKFKG--TKYGYLID-EENYGsieNFVERVek 161 d1tqja_ 131 PVCDLILIMSvnpqsfipEVLP---KIRALRQMCDergLDPWIEVDGGLKPNNTWQVLEa 187 :::::::::: :::: :::::::::: ::::::::::::::::::::: d1o1za_ 162 ERPYSLHVPY--------QAFEleyAVEVLRSFRK---KGIVIFVWTLNDPEIYRKIRR- 209 d1tqja_ 188 GANAIVAGSavfnapnYAEAIAGVrnskr 216 ::::::::: :::::::: d1o1za_ 210 EIDGVITDE-------VELFVKLR----- 226 FAST alignment (Normalized score: 8.31 Raw score:1836.00) d1tqja_ 1 --KNIVVAPSILSADFSR-----------LGEEIKAVDEAGADWIHVDVMDGRFVPNITI 47 ::::::: ::::::::::::::::::::: d1o1za_ 1 HHHHVIVLG---------HRGYSAKYLENTLEAFMKAIEAGANGVELDVR---------- 41 d1tqja_ 48 GPL------------------------------------------IVDAIRPL--TKKTL 63 :::::::: ::::: d1o1za_ 42 ---LSKDGKVVVSHDEDLKRLFGLDVKIRDATVSELKELTDGKITTLKEVFENVSDDKII 98 d1tqja_ 64 DVHLMIVEPEKYVEDFAKAGA-------DIISVHVEHN-ASPHLHRTLCQIRE--LGKKA 113 ::::: :::::::::: ::::: ::::::: ::::: d1o1za_ 99 NIEIK---EREAADAVLE---ISKKRKNLIFSS-----FDLDLLDE-------KFKGTKY 140 d1tqja_ 114 GAVLNPST-------PLDFLEYVLP-VCDLILIMSVNPQSFIPE-----VLPKIRALRQM 160 ::::::: ::::::: :::::::: ::::::::::: d1o1za_ 141 GYLIDEE-NYGSIENFVERVEK---ERPYSLHVP----------YQAFELEYAVEVLRSF 186 d1tqja_ 161 CDERGLDPWIEVDGG--LKPNNTWQVLEAGANAIVAGSAVFNAPNYAE-AIAGVRNSKR- 216 :: :::::::: ::::::::::: ::::::: :::::: d1o1za_ 187 RK---KGIVIFVW--TLNDPEIYRKIRR-EIDGVIT------------DEVELFV----K 224 d1tqja_ 217 -- 217 d1o1za_ 225 LR 226 TMalign alignment (TM-score: 0.66 Raw score:142.07) d1tqja_ 1 --KNIVVAPSIL-S-ADFSRLGEEIKAVDEAGADWIHVDVMD---------GRFVPNIT- 46 :::::::::: : ::::::::::::::::::::::::::: :::: d1o1za_ 1 HHHHVIVLGHRGYSAKYLENTLEAFMKAIEAGANGVELDVRLSKDGKVVVS----HDEDL 56 d1tqja_ 47 ---------IG---P-----------LIVDAIRPLTK--KTLDVHLMIVEPEKYVEDFAK 81 :: : ::::::::::: ::::::::: : :::::::: d1o1za_ 57 KRLFGLDVKIRDATVSELKELTDGKITTLKEVFENVSDDKIINIEIKE--R-EAADAVLE 113 d1tqja_ 82 AG--A--DIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS-T-PLD-FLEYVL-PVC 133 :: : :::::: :: : :::::::: :::::::::: : ::: :::::: ::: d1o1za_ 114 ISKKRKNLIFSSF----DL--D-LLDEKFKG--TKYGYLIDEENYGSIENFVERVEKERP 164 d1tqja_ 134 DLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIV 193 ::::::: ::::::::::::::::: ::::::::::::::::::::: :::::: d1o1za_ 165 YSLHVPY-----QAFELEYAVEVLRSFRK---KGIVIFVWTLNDPEIYRKIRR-EIDGVI 215 d1tqja_ 194 AGSAVFNAPNYAEAIAGVRNSKR 216 :: :: : ::::: : d1o1za_ 216 TD-EV-----E--LFVKL-R--- 226 HHsearch alignment (Probability: 0.84 E-value:0.01) d1tqja_ 18 GEEIKAVDEAGADWIHVDVM---DGRFVP-----------------NITI---------G 48 :::::::::::::::::::: :::::: :::: : d1o1za_ 22 LEAFMKAIEAGANGVELDVRLSKDGKVVVSHDEDLKRLFGLDVKIRDATVSELKELTDGK 81 d1tqja_ 49 PLIVDAIRPLTKKTLDVHLMIV-EPEKYVEDFAKA--GADIISVHVEHNASPHLHRTLCQ 105 ::::::::::::: ::::::: :::::::::::: ::::::::: : :: ::::: d1o1za_ 82 ITTLKEVFENVSD--DKIINIEIKEREAADAVLEISKKRKNLIFSS--F---DL-DLLDE 133 d1tqja_ 106 IRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERG 165 :::: :::::::::: ::::::::::::::::::::::: :::::::::::::::::::: d1o1za_ 134 KFKG-TKYGYLIDEE-NYGSIENFVERVEKERPYSLHVP-YQAFELEYAVEVLRSFRKKG 190 d1tqja_ 166 LDPWIEVDGGLKPNNTWQVLEAGANAIVAG 195 ::: :::::::::::::::::::::::: d1o1za_ 191 IVI---FVWTLNDPEIYRKIRREIDGVITD 217