Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1s2wa_ | Phosphoenolpyruvate mutase | Phosphoenolpyruvate/pyruvate domain | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.525 --> HitDALI alignment (Z-score: 13.7 Raw score:1223.50) d1tqja_ 1 --------------KNIVVAPSILsadfsrLGEEIKAVDEAGADWIHVDvmdgrfvpnit 46 :::::::::: ::::::::::::::::::: d1s2wa_ 1 kvkkttqlkqmlnsKDLEFIMEAH------NGLSARIVQEAGFKGIWGS-glsvsaqlwt 53 d1tqja_ 47 IGPLIVDAIRPLTKKTLDVHLMIVE-----PEKYVEDFAKAGADIISVHVEH-----NAS 96 ::::::::::::::::::::::::: :::::::::::::::::::::: ::: d1s2wa_ 54 QVVEVLEFMSDASDVPILLDADTGYgnfnnARRLVRKLEDRGVAGACLEDKLfgraqPLA 113 d1tqja_ 97 P--HLHRTLCQIRELG----KKAGAVLNPST-------PLDFLEYVLP-VCDLILIMSvn 142 : ::::::::::::: ::::::::::: :::::::::: ::::::::: d1s2wa_ 114 DieEFALKIKACKDSQtdpdFCIVARVEAFIagwgldeALKRAEAYRNaGADAILMHS-- 171 d1tqja_ 143 pqsFIPEvLPKIRALRQMCDergLDPWIEVDGG-lkpNNTWQVLEAGANAIVAGSAVFNA 201 :::: :::::::::::: :::::::::: ::::::::::::::::::::::: d1s2wa_ 172 ---KKAD-PSDIEAFMKAWN---NQGPVVIVPTkyykTPTDHFRDMGVSMVIWANHNLRA 224 d1tqja_ 202 P-------------------nyaeaiagvrnskr 216 : d1s2wa_ 225 Svsaiqqttkqiyddqslvnvedkivsvkeifrl 258 FAST alignment (Normalized score: 10.06 Raw score:2375.00) d1tqja_ 1 --------------KNIVVAPSILSADFSR--LGEEIKAVDEAGADWIHVDVMDGRFVPN 44 :::::::: :::::::::::::::::: d1s2wa_ 1 KVKKTTQLKQMLNSKDLEFIME--------AHNGLSARIVQEAGFKGIWG---------- 42 d1tqja_ 45 ITI------------GPLIVDAIRPLTKKTLDVHLMIV------EPEKYVEDFAKAGADI 86 :::::::::::::::::::::: :::::::::::::::: d1s2wa_ 43 ---SGLSVSAQLWTQVVEVLEFMSDASDVPILLDADT-GYGNFNNARRLVRKLEDRGVAG 98 d1tqja_ 87 ISVHVEHNAS-----------PHLHRTLCQIRE----LGKKAGAVLNPST---------- 121 :::::: :::::::::::: ::::::::: d1s2wa_ 99 ACLEDK----LFGRAQPLADIEEFALKIKACKDSQTDPDFCIVARV----EAFIAGWGLD 150 d1tqja_ 122 -PLDFLEYVLP-VCDLILIMSVNPQSFIPEV-----LPKIRALRQMCDERGL---DPWIE 171 :::::::::: :::::::: :::::::::: ::::: d1s2wa_ 151 EALKRAEAYRNAGADAILMH-----------SKKADPSDIEAFMKA------WNNQGPVV 193 d1tqja_ 172 VDGGLKPN-------NTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKR-------- 216 :: ::::::::::::::::::::: d1s2wa_ 194 IV------PTKYYKTPTDHFRDMGVSMVIWANHNLR----------------ASVSAIQQ 231 d1tqja_ 217 --------------------------- 217 d1s2wa_ 232 TTKQIYDDQSLVNVEDKIVSVKEIFRL 258 TMalign alignment (TM-score: 0.59 Raw score:127.36) d1tqja_ 1 --------KNIVV--APSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGP- 49 ::::: ::::::: ::: d1s2wa_ 1 KVKKTTQLKQMLNSK----------------------DLEFIME------------AHNG 26 d1tqja_ 50 LIVDAIRPLTKKTLDVHLMI----VE--PEKYVEDFAKAG-ADIIS-VH-VEHNASPHLH 100 :::::::::::::::::::: :: :::::::::::: ::::: :: :::: ::::: d1s2wa_ 27 LSARIVQEAGFKGIWGSGLSVSAQLWTQVVEVLEFMSDASDVPILLDADTGYGN-FNNAR 85 d1tqja_ 101 RTLCQIRELGKKAGAVLNP-------ST----PLDFLEYVLP-V----CDLILIMSVNPQ 144 ::::::::::::::::::: :: :::::::::: : :::::::::: : d1s2wa_ 86 RLVRKLEDRGVAGACLEDKLFGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAF-I 144 d1tqja_ 145 SFIP--EVLPKIRALRQMCDERGLDPWIEVDGGL---K--PNNTWQVLEAGANAIVAGSA 197 :::: ::::::::::::: ::::::::: : :::::::::::::::::::: d1s2wa_ 145 AGWGLDEALKRAEAYRNAG------ADAILMHSKKADPSDIEAFMKAWNNQGPVVIVPTK 198 d1tqja_ 198 VFNAPNYAEAIAGVRNS------------------------------------------- 214 :::: :: ::::::::: d1s2wa_ 199 YYKT-PT-DHFRDMGVSMVIWANHNLRASVSAIQQTTKQIYDDQSLVNVEDKIVSVKEIF 256 d1tqja_ 215 --KR 216 d1s2wa_ 257 RL-- 258 HHsearch alignment (Probability: 0.66 E-value:0.00) d1tqja_ 50 LIVDAIRPLTKKTLDVHLMIV-----EPEKYVEDFAKAGADIISVHVEHNASP------H 98 ::::::::::::::::::::: ::::::::::::::::::: :::::: : d1s2wa_ 57 EVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACL--EDKLFGRAQPLAD 114 d1tqja_ 99 LHRTLC---QIRELGKKAGAVLNPSTPLD----FLE-------YVLPV-CDLILIMSVNP 143 :::::: :::::::::::::::::::: ::: ::::: ::::::::::: d1s2wa_ 115 IEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKKA 174 d1tqja_ 144 QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGL-KPNNTWQVLEAGANAIVAGSAVFNA 201 : ::::::::::: :::::::::::: ::::::::::::::::::::::::: d1s2wa_ 175 ---D---PSDIEAFMKAW---NNQGPVVIVPTKYYKTPTDHFRDMGVSMVIWANHNLRA 224