Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1vc4a_ | Indole-3-glycerophosphate synthase, IPGS | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.537 --> HitDALI alignment (Z-score: 19.1 Raw score:1729.10) d1tqja_ 1 -------------------------------------------KNIVVAPSIL------- 10 :::::::::: d1vc4a_ 1 mrpdlsrvpgvlgeiarkrasevapyplpeppsvpsfkeallrPGLSVIAEVKrqspseg 60 d1tqja_ 11 saDFSRLGEEIKAVDEAGADWIHVDVMDGrfvpNITIGPLIVDAIRPLTKKTLDVHLMIV 70 ::::::::::::::::::::::::::: ::::::::::::::::::::::::::: d1vc4a_ 61 liREVDPVEAALAYARGGARAVSVLTEPH----RFGGSLLDLKRVREAVDLPLLRKDFVV 116 d1tqja_ 71 EpEKYVEDFAKAGADIISVHVEHnASPHLHRTLCQIRELGKKAGAVLnPSTP-LDFLEYV 129 : ::::::::::::::::::::: ::::::::::::::::::::::: :::: ::::::: d1vc4a_ 117 D-PFMLEEARAFGASAALLIVAL-LGELTGAYLEEARRLGLEALVEV-HTEReLEIALEA 173 d1tqja_ 130 LpvCDLILIMSVNP--QSFIPEV-LPKIRALRQMCdergLDPWIEVDGGLKP-NNTWQVL 185 : ::::::::::: ::::::: ::::::::::: ::::::::::::: ::::::: d1vc4a_ 174 G--AEVLGINNRDLatLHINLETaPRLGRLARKRG----FGGVLVAESGYSRkEELKALE 227 d1tqja_ 186 EaGANAIVAGSAVFNAPNYAEAIAGVRNskr 216 : :::::::::::::::::::::::::: d1vc4a_ 228 G-LFDAVLIGTSLMRAPDLEAALRELVG--- 254 FAST alignment (Normalized score: 14.77 Raw score:3460.00) d1tqja_ 1 -------------------------------------------KNIVVAPSILSADF--- 14 ::::::::: d1vc4a_ 1 MRPDLSRVPGVLGEIARKRASEVAPYPLPEPPSVPSFKEALLRPGLSVIAEV-----KRQ 55 d1tqja_ 15 ---------SRLGEEIKAVDEAGADWIHVDVMDGRFVPNI----TIGPLIVDAIRPLTKK 61 ::::::::::::::::::::::: :::::::::::::::: d1vc4a_ 56 SPSEGLIREVDPVEAALAYARGGARAVSVLTE--------PHRFGGSLLDLKRVREAVDL 107 d1tqja_ 62 TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNA---SPHLHRTLCQIRELGKKAGAVLN 118 ::::::::: :::::::::::::::::::: ::::::::::::::::::::: d1vc4a_ 108 PLLRKDFVV-DPFMLEEARAFGASAALLIV----ALLGELTGAYLEEARRLGLEALVE-- 160 d1tqja_ 119 PS-TPLDFLEYVLP-VCDLILIMSVNPQSFIPE-------VLPKIRALRQMCDERGLDPW 169 ::::::::::: :::::::::: :::::::::::::::::::: d1vc4a_ 161 --VHTERELEIALEAGAEVLGINNR--------DLATLHINLETAPRLGRLARKRGFGGV 210 d1tqja_ 170 IEVDGGL-KPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKR- 216 ::::::: :::::::::: ::::::::::::::::::::::::: d1vc4a_ 211 LVAESGYSRKEELKALEG-LFDAVLIGTSLMRAPDLEAALRELV----G 254 TMalign alignment (TM-score: 0.79 Raw score:170.04) d1tqja_ 1 -----------------------------------------K-N-IVVAPSILS------ 11 : : ::::::::: d1vc4a_ 1 MRPDLSRVPGVLGEIARKRASEVAPYPLPEPPSVPSFKEALLRPGLSVIAEVKRQSPSEG 60 d1tqja_ 12 -ADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV 70 :::::::::::::::::::::::::::: :::::::::::::::::::::::::: d1vc4a_ 61 LIREVDPVEAALAYARGGARAVSVLTEPH----RFGGSLLDLKRVREAVDLPLLRKDFV- 115 d1tqja_ 71 EPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVL 130 :::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::: d1vc4a_ 116 VDPFMLEEARAFGASAALLIVA-LLGELTGAYLEEARRLGLEALVEVHTERELEIALEAG 174 d1tqja_ 131 PVCDLILIMSVNP---QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK-PNNTWQVLE 186 ::::::::::: ::::::::::::::::::: : :::::::::: ::::::::: d1vc4a_ 175 --AEVLGINNRDLATLHINLETAPRLGRLARKRGF---G-GVLVAESGYSRKEELKALEG 228 d1tqja_ 187 AGANAIVAGSAVFNAPNYAEAIAGVRNSKR 216 :::::::::::::::::::::::::: d1vc4a_ 229 -LFDAVLIGTSLMRAPDLEAALRELVG--- 254 HHsearch alignment (Probability: 0.98 E-value:0.00) d1tqja_ 6 APSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDV 65 :::::::::::::::::::::::::::::: ::::: ::::::::::::::::::::: d1vc4a_ 56 SPSEGLIREVDPVEAALAYARGGARAVSVL-TEPHR---FGGSLLDLKRVREAVDLPLLR 111 d1tqja_ 66 HLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDF 125 ::::::::::: ::::::::::::::::: :::::::::::::::::::::::::::::: d1vc4a_ 112 KDFVVDPFMLE-EARAFGASAALLIVALL-GELTGAYLEEARRLGLEALVEVHTERELEI 169 d1tqja_ 126 LEYVLPVCDLILIMSVNP---QSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTW 182 :::: : :::::::: :::::: :::::::::::::::::::::::::::::::: d1vc4a_ 170 ALEA--G---AEVLGINNRDLATLHIN-LETAPRLGRLARKRGFGGVLVAESGYSRKEEL 223 d1tqja_ 183 QVLEAGANAIVAGSAVFNAPNYAEAIAGV 211 ::::::::::::::::::::::::::::: d1vc4a_ 224 KALEGLFDAVLIGTSLMRAPDLEAALREL 252