Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T515_B.pdb B
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tqja_ | D-ribulose-5-phosphate 3-epimerase | Ribulose-phoshate binding barrel | TIM beta/alpha-barrel | α/β |
| Hit | d1ojxa_ | Archaeal fructose 1,6-bisphosphate aldolase | Aldolase | TIM beta/alpha-barrel | α/β |
Query <-- 2.347 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:1145.60) query 1 mietpyylidkakltrnmeriahvreksGAKALLALKCF---aTWSVFDLMRD-YMDGTT 56 ::::::::::: :::::::::: :::::: d1tqja_ 1 ---------------------------kNIVVAPSILSAdfsrLGEEIKAVDEaGADWIH 33 query 57 SSS------------LFEVRLGRERFGKETHAYSV--AYGDnEIDEVVS-HADKIIFNS- 100 ::: :::::::::::::::::::: :::: ::::::: ::::::::: d1tqja_ 34 VDVmdgrfvpnitigPLIVDAIRPLTKKTLDVHLMivEPEK-YVEDFAKaGADIISVHVe 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQrlgeWDVPKVERVMDRINGFMIHN-NCENkdf 154 :::::::::::: ::::::::::: :::::::::::::::::::: :::: d1tqja_ 93 hnaSPHLHRTLCQIRelGKKAGAVLNPS----TPLDFLEYVLPVCDLILIMSvNPQS--- 145 query 155 glFDRMLGEIEeRFGALIA---RVDWVSLGGGIHFtgddypvdaFSARLRAFSdrygvqI 211 ::::::::: ::::::: ::::::::::::: ::::::::: : d1tqja_ 146 -fIPEVLPKIR-ALRQMCDergLDPWIEVDGGLKP--------nNTWQVLEAG-----aN 190 query 212 YLEPGEASITKsttlevtvldtlynknlaivdssieahmldlliyretakvlpnegshsy 271 ::::::::::: d1tqja_ 191 AIVAGSAVFNA------------------------------------------------- 201 query 272 micgksclagdvfgefrfaeelkvgdrisfqdaagytmvkknwfngvkmpaiaireldgs 331 d1tqja_ 202 ------------------------------------------------------------ 202 query 332 vrtvreftyadyeqsls 348 d1tqja_ 202 --pnyaeaiagvrnskr 216 FAST alignment (Normalized score: 7.32 Raw score:2007.00) query 1 MIETPYYLIDKAKLTRNMERIAHVREKS-GAKALLALK-CFA--TWSVFDLMRD-YMDGT 55 ::::::::: ::: :::::::::: ::::: d1tqja_ 1 ----------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWI 32 query 56 TS------------SSLFEVRLGRERFGKETHAYSVAY----GDNEIDEVVS-HADKIIF 98 :: ::::::::::::::::::::: :::::::::: ::::::: d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHL---MIVEPEKYVEDFAKAGADIISV 89 query 99 N--SISQ---LERFADKA---AGIARGLRLNPQRLGE-WDVPKVERVMDRINGFMIHNNC 149 :::: ::::::: ::::::::::: :::::::::::::::::::: d1tqja_ 90 -HVEHNASPHLHRTLCQ-IRELGKKAGAVLNP-----STPLDFLEYVLPVCDLILIMS-- 140 query 150 ENKD------FGLFDRMLGEIEERFGALIARV----DWVSLGGGIHFTGDDYPVDA---F 196 ::::::::::::::::: ::::::::: : d1tqja_ 141 ----VNPQSFIPEVLPKIRALRQMCDE-----RGLDPWIEVDGGL-----------KPNN 180 query 197 SARLRAFSDRYGVQ---IYLEPGEASITKSTTLEVTVLDTLYNKNLAIVDSSIEAHMLDL 253 :::::: ::::::::: d1tqja_ 181 TWQVLE--------AGANAIVAGSAV---------------------------------- 198 query 254 LIYRETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKN 313 d1tqja_ 199 ------------------------------------------------------------ 199 query 314 WFNGVKMPAIAIRELDGSVRTVREFTYADYEQSLS------------------ 348 d1tqja_ 199 -----------------------------------FNAPNYAEAIAGVRNSKR 216 TMalign alignment (TM-score: 0.43 Raw score:149.23) query 1 MIETPYYLIDKAKLTRNMERIAHVREKSGAKALLALKCF-A--TWSVFDLMRD-YMDGTT 56 :::::::::::: : :::::::::: :::::: d1tqja_ 1 ---------------------------KNIVVAPSILSADFSRLGEEIKAVDEAGADWIH 33 query 57 S-S-----------SLFEVRLGRERFGKETHAYSVA--YGDNEIDEVVS-HADKIIFNS- 100 : : :::::::::::::::::::::: ::: ::::::: ::::::::: d1tqja_ 34 VDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEK-YVEDFAKAGADIISVHVE 92 query 101 ---ISQLERFADKAA--GIARGLRLNPQRLGEWDVPKVERVMDRINGFMIHNN--CENKD 153 :::::::::::: ::::::::::: :::: ::::::::::::::::: ::: d1tqja_ 93 HNASPHLHRTLCQIRELGKKAGAVLNPS---TPLD-FLEYVLPVCDLILIMSVNPQSF-- 146 query 154 FGLFDRMLGEIEERFGALIA---RVDWVSLGGGIHFTGDDYPVDAFSARLRAFSDRYGVQ 210 : ::::::::::::::: ::::::::::::: ::: :: :: ::: : d1tqja_ 147 ---I-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNT--WQ-VL-EAG-----A 189 query 211 IYLEPGEASITKST-------------TLEVTVLDTLYNKNLAIVDSSIEAHMLDLLIYR 257 :::::::::::::: d1tqja_ 190 NAIVAGSAVFNAPNYAEAIAGVRNSKR--------------------------------- 216 query 258 ETAKVLPNEGSHSYMICGKSCLAGDVFGEFRFAEELKVGDRISFQDAAGYTMVKKNWFNG 317 d1tqja_ 217 ------------------------------------------------------------ 217 query 318 VKMPAIAIRELDGSVRTVREFTYADYEQSLS 348 d1tqja_ 217 ------------------------------- 217 HHsearch alignment (Probability: 0.21 E-value:0.01) query 75 HAYSVAYGDNEIDEVVSHADKIIFN--SISQLERFADKAAG--IARGLRLNPQRLGEWDV 130 ::::::::::::::::::::::::: :::::::::::::: :::::::::: ::: d1tqja_ 68 MIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPS----TPL 123 query 131 PKVERVMDRINGFMIHNNCENKDFGLFDRMLGEIEERFGALIARVDW-VSLG 181 ::::::::::::::::::::::::::::::::::::::::::::::: :::: d1tqja_ 124 DFLEYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 175
Intermediate <-- 2.606 --> HitDALI alignment (Z-score: 13.7 Raw score:1279.40) d1tqja_ 1 ------------KNIVVAPSILS------------aDFSRLGEEIKAVDEAGADWIHVDv 36 ::::::::::: ::::::::::::::::::::::: d1ojxa_ 1 nltekflrifarRGKSIILAYDHgiehgpadfmdnpDSADPEYILRLARDAGFDGVVFQ- 59 d1tqja_ 37 mdgrfvpnitigPLIVDAIRPlTKKTLDVHLMI----------VEPEKYVEDFAKAGADI 86 ::::::::: ::::::::::: ::::::::::::::::: d1ojxa_ 60 ------------RGIAEKYYD-GSVPLILKLNGkttlyngepvSVANCSVEEAVSLGASA 106 d1tqja_ 87 ISVHVE------HNASPHLHRTLCQIRELGKKAGAVLNPS--------------tPLDFL 126 :::::: :::::::::::::::::::::::::::: ::::: d1ojxa_ 107 VGYTIYpgsgfeWKMFEELARIKRDAVKFDLPLVVWSYPRggkvvnetapeivayAARIA 166 d1tqja_ 127 EYVlpVCDLILIMsvnpqsFIPEvLPKIRALRQMCDerglDPWIEVDGG-------lKPN 179 ::: :::::::: :::: :::::::::::: ::::::::: ::: d1ojxa_ 167 LEL--GADAMKIK------YTGD-PKTFSWAVKVAG----KVPVLMSGGpktkteedFLK 213 d1tqja_ 180 NTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSkr 216 ::::::::::::::::::::::::::::::::::: d1ojxa_ 214 QVEGVLEAGALGIAVGRNVWQRRDALKFARALAELvy 250 FAST alignment (Normalized score: 9.71 Raw score:2257.00) d1tqja_ 1 K-------------NIVVAPSILSAD---------------FSRLGEEIKAVDEAGADWI 32 ::::::::: ::::::::::::::::::: d1ojxa_ 1 -NLTEKFLRIFARRGKSIILAYD---HGIEHGPADFMDNPDSADPEYILRLARDAGFDGV 56 d1tqja_ 33 HVDVMDGRFVPNITIGPLIVDAIRPLT---KKTLDVHLMIVEPEK--------------- 74 :: :::::::: ::::::: d1ojxa_ 57 VF-------------QRGIAEKY----YDGSVPLILK--------LNGKTTLYNGEPVSV 91 d1tqja_ 75 ---YVEDFAKAGADIISVHVEHNAS-----------PHLHRTLCQIRELGKKAGAVLNPS 120 ::::::::::::::::: ::::::::::::::::::::: d1ojxa_ 92 ANCSVEEAVSLGASAVGYTI-----YPGSGFEWKMFEELARIKRDAVKFDLPLVVWS--- 143 d1tqja_ 121 T---------------PLDFLEYVL-PVCDLILIMSVNPQSFIPE----VLPKIRALRQM 160 ::::::::: :::::::: ::::::::::: d1ojxa_ 144 -YPRGGKVVNETAPEIVAYAARIALELGADAMKI-----------KYTGDPKTFSWAVKV 191 d1tqja_ 161 CDERG-LDPWIEVDGGL------------KPNNTWQVLEAGANAIVAGSAVFNAPNYAEA 207 :::::: ::::::::::::::::::::::::::::::: d1ojxa_ 192 -----AGKVPVL-----MSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKF 241 d1tqja_ 208 IAGVRNSKR---- 216 ::::: d1ojxa_ 242 ARALA----ELVY 250 TMalign alignment (TM-score: 0.69 Raw score:149.07) d1tqja_ 1 ----------K--NIVVAPSI-L--------S--A-DFSRLGEEIKAVDEAGADWIHVDV 36 : :::::::: : : : :::::::::::::::::::::: d1ojxa_ 1 NLTEKFLRIFARRGKSIILAYDHGIEHGPADFMDNPDSADPEYILRLARDAGFDGVVF-- 58 d1tqja_ 37 MDGRFVPNITIGPLIVDAIRPLTKKTLDVH-LMI---------VEPEKYVEDFAKAGADI 86 :::::::::: :::::::: ::: ::::::::::::::::: d1ojxa_ 59 -----------QRGIAEKYYD-GSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGASA 106 d1tqja_ 87 ISVHVE-----HNASPH-LHRTLCQIRELGKKAGAVLNP-------S----T--PL-DFL 126 :::::: :::::: ::::::::::::::::::::: : : :: ::: d1ojxa_ 107 VGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIA 166 d1tqja_ 127 EYVLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG--L-----KPN 179 ::: ::::::::: :::::: ::::::::: : :::::::: : ::: d1ojxa_ 167 LEL--GADAMKIKY------TGDPKT-FSWAVKVAG---K-VPVLMSGGPKTKTEEDFLK 213 d1tqja_ 180 NTWQVLEAGANAIVAGSAVF-NAPNYAEAIAGVRNSK-R 216 :::::::::::::::::::: ::::: :::::::::: d1ojxa_ 214 QVEGVLEAGALGIAVGRNVWQRRDAL-KFARALAELVY- 250 HHsearch alignment (Probability: 0.91 E-value:0.00) d1tqja_ 16 RLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEP--- 72 ::::::::::::::::: : :::::::::::: ::::::::::::: d1ojxa_ 40 DPEYILRLARDAGFDGV-----V--------FQRGIAEKYYDG-SVPLILKLNGKTTLYN 85 d1tqja_ 73 -------EKYVEDFAKAGADIISVHVEHN------ASPHLHRTLCQIRELGKKAGAVLNP 119 :::::::::::::::::::::: ::::::::::::::::::::::::: d1ojxa_ 86 GEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYP 145 d1tqja_ 120 ST-------PLDFLEY---VLPVCDLILIMSVNPQSFIPEVLPKIRALRQMCDERGLDPW 169 :: ::::::: ::::::::::::::::: :::::::::: ::::: d1ojxa_ 146 RGGKVVNETAPEIVAYAARIALELGADAMKIKYTGD--PKTFSWAVKV-------AGKVP 196 d1tqja_ 170 IEVDGG---LKPN-N---TWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNS 214 :::::: :::: : :::::::::::::::::::::::::::::::::: d1ojxa_ 197 VLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAEL 248