Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1jx7a_ | Hypothetical protein YchN | YchN-like | YchN-like | α/β |
| Hit | d1l1sa_ | Hypothetical protein MTH1491 | YchN-like | YchN-like | α/β |
Query <-- 0.991 --> IntermediateDALI alignment (Z-score: 13.0 Raw score:806.90) query 1 gmeNKKMNLLLFSGDY--DKALASLIIANAAREME--IEVTIFCAFWGLLLLRDPekasq 56 ::::::::::::: ::::::::::::::::: :::::::::::::::::: d1jx7a_ 1 ---MQKIVIVANGAPYgsESLFNSLRLAIALREQEsnLDLRLFLMSDAVTAGLRG----- 52 query 57 edkslyeqafssltpreaeelplskmnlggigkkmlLEMMkeekaPKLSDLLSGARKKEV 116 :::: ::::::::::::::: d1jx7a_ 53 ----------------------------------qkPGEG-----YNIQQMLEILTAQNV 73 query 117 KFYAXQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI 160 :::::::::::::::::::::::::::::::::::::::::::: d1jx7a_ 74 PVKLCKTCTDGRGISTLPLIDGVEIGTLVELAQWTLSADKVLTF 117 FAST alignment (Normalized score: 12.96 Raw score:1774.00) query 1 GMENKKMNLLLFSGD---YDKALASLIIANAARE--MEIEVTIFCAFWGLLLLRDPEKAS 55 ::::::::::: :::::::::::::::: :::::::::::::::::: d1jx7a_ 1 ---MQKIVIVANGA-PYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGL------ 50 query 56 QEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEE------KAPKLSDLLS 109 :::::::::: d1jx7a_ 51 --------------------------------------------RGQKPGEGYNIQQMLE 66 query 110 GARKKEVKFYAXQLSVEIMGFKKE-ELFPEVQIMDVKEYLKNALESDLQLFI-- 160 :::::::::::::::::::: ::: ::::::::::::::::::::::::: d1jx7a_ 67 ILTAQNVPVKLCKTCTDGRG-ISTLPLIDGVEIGTLVELAQWTLSADKVL--TF 117 TMalign alignment (TM-score: 0.61 Raw score:97.67) query 1 GMENKKMNLLLFSGDY--DKALASLIIANAARE-M-EIEVTIFCAFWGLLLLRDPEKASQ 56 ::::::::::::: ::::::::::::::: : ::::::::::::::::::: d1jx7a_ 1 ---MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRG----- 52 query 57 EDKSLYEQAFSSLTPREAEE-LPLSKMNLGGIGKKMLLEMMKEEKAPKLS-DLLSGARKK 114 : :: : : ::: ::::::::: d1jx7a_ 53 ----------------Q-KPG-------------E--G---------YNIQQMLEILTAQ 71 query 115 EVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI 160 :::::::::::::::::::::::::::::::::::::::::::::: d1jx7a_ 72 NVPVKLCKTCTDGRGISTLPLIDGVEIGTLVELAQWTLSADKVLTF 117 HHsearch alignment (Probability: 0.99 E-value:0.00) query 5 KKMNLLLFSG--DYDKALASLIIANAAREMEI--EVTIFCAFWGLLLLRDPEKASQEDKS 60 :::::::::: :::::::::::::::::::: ::::::::::::::::::::: d1jx7a_ 2 QKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPG----- 56 query 61 LYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFYA 120 ::::::::::::::::::::: d1jx7a_ 57 ---------------------------------------EGYNIQQMLEILTAQNVPVKL 77 query 121 XQLSVEIMGFKKEELFPEVQIMDVKEYLKNALESDLQL 158 :::::::::::::::::::::::::::::::::::::: d1jx7a_ 78 CKTCTDGRGISTLPLIDGVEIGTLVELAQWTLSADKVL 115
Intermediate <-- 0.991 --> HitDALI alignment (Z-score: 15.8 Raw score:793.90) d1jx7a_ 1 MQKIVIVANGApyGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQkpgegyN 60 ::::::::::: :::::::::::::::::::::::::::::::::::::::: : d1l1sa_ 1 DYRVVFHIDED--DESRVLLLISNVRNLMADLESVRIEVVAYSMGVNVLRRDS------E 52 d1jx7a_ 61 IQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGT--LVELAQWTLSADKVLTF 117 :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: d1l1sa_ 53 YSGDVSELTGQGVRFCACSNTLRASGMDGDDLLEGVDVVSsgVGHIVRRQTEGWAYIRP 111 FAST alignment (Normalized score: 14.50 Raw score:1652.00) d1jx7a_ 1 MQKIVIVANGAPY--GSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPGEG 58 ::::::::: ::::::::::::::::::::::::::::::::::::::: d1l1sa_ 1 DYRVVFHID----EDDESRVLLLISNVRNLMADLESVRIEVVAYSMGVNVLRRD------ 50 d1jx7a_ 59 Y-NIQQMLEILTAQNVPVKLCKTCTDGRG-ISTLPLIDGVEIG--TLVELAQWTLSA--D 112 ::::::::::::::::::::::::::: ::: ::::::::: :::::::::: : d1l1sa_ 51 -SEYSGDVSELTGQGVRFCACSNTLRASGMDGD-DLLEGVDVVSSGVGHIVRRQT--EGW 106 d1jx7a_ 113 KVLTF- 117 :::: d1l1sa_ 107 AYIR-P 111 TMalign alignment (TM-score: 0.80 Raw score:93.56) d1jx7a_ 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPGEGYN 60 ::::::::::: :::::::::::::::::::::::::::::::::::::::: : d1l1sa_ 1 DYRVVFHIDED--DESRVLLLISNVRNLMADLESVRIEVVAYSMGVNVLRRDS------E 52 d1jx7a_ 61 IQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTL--VELAQWTLSADKVLTF 117 ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::: d1l1sa_ 53 YSGDVSELTGQGVRFCACSNTLRASGMDGDDLLEGVDVVSSGVGHIVRRQTEGWAYIRP 111 HHsearch alignment (Probability: 0.99 E-value:0.00) d1jx7a_ 3 KIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAGLRGQKPGEGYNIQ 62 ::::::::: ::::::::::::::::::::::::::::::::::::::: :::: d1l1sa_ 3 RVVFHIDED--DESRVLLLISNVRNLMADLESVRIEVVAYSMGVNVLRRD------SEYS 54 d1jx7a_ 63 QMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEI--GTLVELAQWTLSADKVL 115 :::::::::::::::::::::::::::::::::::: ::::::::::::::::: d1l1sa_ 55 GDVSELTGQGVRFCACSNTLRASGMDGDDLLEGVDVVSSGVGHIVRRQTEGWAYI 109