Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1qyca_ | Phenylcoumaran benzylic ether reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1qj4a_ | Hydroxynitrile lyase | alpha/beta-Hydrolases | alpha/beta-Hydrolases | α/β |
Query <-- 0.813 --> IntermediateDALI alignment (Z-score: 4.9 Raw score:359.30) query 1 gMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAfwglllLRDPekasqedks 60 :::::::::: ::::::::::::::::::::::: :::: d1qyca_ 1 -GSRSRILLIG-----atGYIGRHVAKASLDLGHPTFLLVR-----eSTAS--------- 40 query 61 lyeqafssltpREAEelplskmnlggigkkmllemmkeekapkLSDLLSGARKKEVKFY- 119 :::: :::::::::::::::: d1qyca_ 41 -----------SNSE----------------------------KAQLLESFKASGANIVh 61 query 120 AXQLsveimgfkkeelfpevqimDVKEYLKNALESDLQLFI------------------- 160 :::: :::::::::::::::::: d1qyca_ 62 GSID-------------------DHASLVEAVKNVDVVISTvgslqiesqvniikaikev 102 query 161 ------------------------------------------------------------ 161 d1qyca_ 103 gtvkrffpsefgndvdnvhavepaksvfevkakvrraieaegipytyvssncfagyflrs 162 query 161 ------------------------------------------------------------ 161 d1qyca_ 163 laqagltapprdkvvilgdgnarvvfvkeedigtftikavddprtlnktlylrlpantls 222 query 161 ------------------------------------------------------------ 161 d1qyca_ 223 lnelvalwekkidktlekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigp 282 query 161 ------------------------- 161 d1qyca_ 283 agveasqlypdvkyttvdeylsnfv 307 FAST alignment (Normalized score: 3.09 Raw score:685.40) query 1 GMENKKMNLLLFSGDYDK----ALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQ 56 :::::::: ::::::::::::::::::::::: d1qyca_ 1 -GSRSRILL---------IGATGYIGRHVAKASLDLGHPTFLLVR--------------- 35 query 57 EDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAP--------KLSDLL 108 :::::: d1qyca_ 36 ----------------------------------------------ESTASSNSEKAQLL 49 query 109 SGARKKEVKFYAXQLSVEIMGFKKEELFPEVQI----MDVKEYLKNALESDLQLFI---- 160 ::::::::::: ::::::::::::::::: d1qyca_ 50 ESFKASGANIV----------------------HGSIDDHASLVEAVKNVDVVI--STVG 85 query 161 ------------------------------------------------------------ 161 d1qyca_ 86 SLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGI 145 query 161 ------------------------------------------------------------ 161 d1qyca_ 146 PYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDP 205 query 161 ------------------------------------------------------------ 161 d1qyca_ 206 RTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAI 265 query 161 ------------------------------------------ 161 d1qyca_ 266 SHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 TMalign alignment (TM-score: 0.36 Raw score:58.19) query 1 GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKS 60 :: ::::::::::::::::::::::::: : ::::::: :: d1qyca_ 1 GS--RSRILLIGATGYIGRHVAKASLDLG----H-PTFLLVR--ES-------------- 37 query 61 LYEQAFSSLTPR-EAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFY 119 ::::::: ::: : :: ::::: :::: d1qyca_ 38 -----TASSNSEKAQL-L--------------------------ES-FKASG----ANIV 60 query 120 AXQLSVE-IMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI------------------ 160 ::::: : :::::::::: : ::::: d1qyca_ 61 HGSID-DH---------------ASLVEAVKNV--D-VVISTVGSLQIESQVNIIKAIKE 101 query 161 ------------------------------------------------------------ 161 d1qyca_ 102 VGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLR 161 query 161 ------------------------------------------------------------ 161 d1qyca_ 162 SLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTL 221 query 161 ------------------------------------------------------------ 161 d1qyca_ 222 SLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIG 281 query 161 -------------------------- 161 d1qyca_ 282 PAGVEASQLYPDVKYTTVDEYLSNFV 307 HHsearch alignment (Probability: 0.02 E-value:0.33) query 89 KKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: d1qyca_ 245 EEEVLKLIADTPF-PANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYL 303 query 149 KN 150 :: d1qyca_ 304 SN 305
Intermediate <-- 0.646 --> HitDALI alignment (Z-score: 4.5 Raw score:607.90) d1qyca_ 1 gSRSRILLIG-----ATGYigRHVAKASLDLGHPTFLLV----RESTAssnsekaqlles 51 ::::::::: :::: :::::::::::::::::: ::::: d1qj4a_ 1 -AFAHFVLIHtichgAWIW--HKLKPLLEALGHKVTALDlaasGVDPR------------ 45 d1qyca_ 52 fkasganivhgsiDDHASLVEAVK-----nVDVVISTvgslqIESQVNIIKAIKEVG-TV 105 ::::::::::: ::::::: ::::::::::::::: :: d1qj4a_ 46 ----qieeigsfdEYSEPLLTFLEalppgeKVILVGE-----SCGGLNIAIAADKYCeKI 96 d1qyca_ 106 KRFFPSEfgndvdnvhavepaksvfevkakVRRA-------------------------- 139 ::::::: :::: d1qj4a_ 97 AAAVFHN----------------------sVLPDtehcpsyvvdklmevfpdwkdttyft 134 d1qyca_ 140 --------------------------------------------------------ieaE 143 : d1qj4a_ 135 ytkdgkeitglklgftllrenlytlcgpeeyelakmltrkgslfqnilakrpfftkegyG 194 d1qyca_ 144 GIPYTYV--------------------------SSNCFAgyflrslaqagltapprdkvv 177 ::::::: :::::: d1qj4a_ 195 SIKKIYVwtdqdeiflpefqlwqienykpdkvyKVEGGD--------------------- 233 d1qyca_ 178 ilgdgnarvvfvKEEDIGTFTIKAVDDPrtlnktlylrlpantlslnelvalwekkidkt 237 :::::::::::::::: d1qj4a_ 234 -------hklqlTKTKEIAEILQEVADT-------------------------------- 254 d1qyca_ 238 lekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigpagveasqlypdvkyt 297 d1qj4a_ 255 ------------------------------------------------------------ 255 d1qyca_ 298 tvdeylsnfv 307 d1qj4a_ 255 --------yn 256 FAST alignment (Normalized score: 3.17 Raw score:887.30) d1qyca_ 1 GSRSRILLIGATGY---------IGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLES 51 ::::::: ::::::::::::::::::::: d1qj4a_ 1 -AFAHFVL------IHTICHGAWIWHKLKPLLEALGHKVTALDL---------------- 37 d1qyca_ 52 FKASGANIVHGSID------------------DHASLVEAVKNV-------DVVISTVGS 86 :::::::::: ::::: :: d1qj4a_ 38 --------------AASGVDPRQIEEIGSFDEYSEPLLTFLE--ALPPGEKVILVG--ES 79 d1qyca_ 87 LQIESQVNIIKAIKE--VGTVKRFFPSEFGNDVDNVHAVEPAKS---------------- 128 ::::::::::: ::::::::: d1qj4a_ 80 CGGLNIAIAAD----KYCEKIAAAVF------------------HNSVLPDTEHCPSYVV 117 d1qyca_ 129 ------------------------------------------------------------ 129 d1qj4a_ 118 DKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRENLYTLCGPEEYELAKMLTRKGSL 177 d1qyca_ 129 --------------------------------VFEVKAKVRRAIEAEGIP----YTYVSS 152 :::::::::: :::::: d1qj4a_ 178 FQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIE--------NYKPDKVYKV 229 d1qyca_ 153 NCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFV--------KEEDIGTFTIKAVDD 204 : :::::::::::::: d1qj4a_ 230 E------------------------------------GGDHKLQLTKTKEIAEILQEVA- 252 d1qyca_ 205 PRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIA 264 d1qj4a_ 253 ------------------------------------------------------------ 253 d1qyca_ 265 ISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV---- 307 d1qj4a_ 253 -------------------------------------------DTYN 256 TMalign alignment (TM-score: 0.34 Raw score:105.83) d1qyca_ 1 GSRSRILLIG-----ATGYIGRHVAKASLDLGHPTFLLVR-ESTA----------SSNSE 44 ::::::::: ::: :::::::::::::::::::: :::: d1qj4a_ 1 -AFAHFVLIHTICHGAWI--WHKLKPLLEALGHKVTALDLAASGVDPRQIEEIGS----- 52 d1qyca_ 45 KAQLLESFKASGANIVHGSIDDHASLVEAVK-N----VDVVISTVGSLQIESQVNIIKAI 99 ::::::::::::: : :::::::: : ::::::::: d1qj4a_ 53 ------------------FDEYSEPLLTFLEALPPGEKVILVGES---C--GGLNIAIAA 89 d1qyca_ 100 KEVG-TVKRFFPSE---------------------------------------------- 112 :::: ::::::::: d1qj4a_ 90 DKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGF 149 d1qyca_ 113 ---------------------------------------------------FGNDVDNVH 121 ::::: d1qj4a_ 150 TLLRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQ---- 205 d1qyca_ 122 AVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFA-GY--FLRSLAQAGLTAPPRDKVVI 178 : :: :::::::::::::: ::::::::::: : d1qj4a_ 206 D--EI-FLPEFQLWQIENYK----PDKVYKVEGGDH-KLQ-------------------- 237 d1qyca_ 179 LGDGNARVVFVKEEDIGTFTIKAVDDPRTL-NKTLYLRLPANTLSLNELVALWEKKIDKT 237 ::::::::::::::::: : d1qj4a_ 238 ----------LTKTKEIAEILQEVADT--YN----------------------------- 256 d1qyca_ 238 LEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYT 297 d1qj4a_ 257 ------------------------------------------------------------ 257 d1qyca_ 298 TVDEYLSNFV 307 d1qj4a_ 257 ---------- 257 HHsearch alignment (Probability: 0.74 E-value:0.00) d1qyca_ 10 GATGYIGRHVAKASLDLGHPTFLLVRESTASSN 42 ::::::::::::::::::::::::::::::::: d1qj4a_ 12 CHGAWIWHKLKPLLEALGHKVTALDLAASGVDP 44