Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1qyca_ | Phenylcoumaran benzylic ether reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1jdpa_ | Hormone binding domain of the atrial natriuretic peptide receptor | Periplasmic binding protein-like I | Periplasmic binding protein-like I | α/β |
Query <-- 0.813 --> IntermediateDALI alignment (Z-score: 4.9 Raw score:359.30) query 1 gMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAfwglllLRDPekasqedks 60 :::::::::: ::::::::::::::::::::::: :::: d1qyca_ 1 -GSRSRILLIG-----atGYIGRHVAKASLDLGHPTFLLVR-----eSTAS--------- 40 query 61 lyeqafssltpREAEelplskmnlggigkkmllemmkeekapkLSDLLSGARKKEVKFY- 119 :::: :::::::::::::::: d1qyca_ 41 -----------SNSE----------------------------KAQLLESFKASGANIVh 61 query 120 AXQLsveimgfkkeelfpevqimDVKEYLKNALESDLQLFI------------------- 160 :::: :::::::::::::::::: d1qyca_ 62 GSID-------------------DHASLVEAVKNVDVVISTvgslqiesqvniikaikev 102 query 161 ------------------------------------------------------------ 161 d1qyca_ 103 gtvkrffpsefgndvdnvhavepaksvfevkakvrraieaegipytyvssncfagyflrs 162 query 161 ------------------------------------------------------------ 161 d1qyca_ 163 laqagltapprdkvvilgdgnarvvfvkeedigtftikavddprtlnktlylrlpantls 222 query 161 ------------------------------------------------------------ 161 d1qyca_ 223 lnelvalwekkidktlekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigp 282 query 161 ------------------------- 161 d1qyca_ 283 agveasqlypdvkyttvdeylsnfv 307 FAST alignment (Normalized score: 3.09 Raw score:685.40) query 1 GMENKKMNLLLFSGDYDK----ALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQ 56 :::::::: ::::::::::::::::::::::: d1qyca_ 1 -GSRSRILL---------IGATGYIGRHVAKASLDLGHPTFLLVR--------------- 35 query 57 EDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAP--------KLSDLL 108 :::::: d1qyca_ 36 ----------------------------------------------ESTASSNSEKAQLL 49 query 109 SGARKKEVKFYAXQLSVEIMGFKKEELFPEVQI----MDVKEYLKNALESDLQLFI---- 160 ::::::::::: ::::::::::::::::: d1qyca_ 50 ESFKASGANIV----------------------HGSIDDHASLVEAVKNVDVVI--STVG 85 query 161 ------------------------------------------------------------ 161 d1qyca_ 86 SLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGI 145 query 161 ------------------------------------------------------------ 161 d1qyca_ 146 PYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDP 205 query 161 ------------------------------------------------------------ 161 d1qyca_ 206 RTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAI 265 query 161 ------------------------------------------ 161 d1qyca_ 266 SHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 TMalign alignment (TM-score: 0.36 Raw score:58.19) query 1 GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKS 60 :: ::::::::::::::::::::::::: : ::::::: :: d1qyca_ 1 GS--RSRILLIGATGYIGRHVAKASLDLG----H-PTFLLVR--ES-------------- 37 query 61 LYEQAFSSLTPR-EAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFY 119 ::::::: ::: : :: ::::: :::: d1qyca_ 38 -----TASSNSEKAQL-L--------------------------ES-FKASG----ANIV 60 query 120 AXQLSVE-IMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI------------------ 160 ::::: : :::::::::: : ::::: d1qyca_ 61 HGSID-DH---------------ASLVEAVKNV--D-VVISTVGSLQIESQVNIIKAIKE 101 query 161 ------------------------------------------------------------ 161 d1qyca_ 102 VGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLR 161 query 161 ------------------------------------------------------------ 161 d1qyca_ 162 SLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTL 221 query 161 ------------------------------------------------------------ 161 d1qyca_ 222 SLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIG 281 query 161 -------------------------- 161 d1qyca_ 282 PAGVEASQLYPDVKYTTVDEYLSNFV 307 HHsearch alignment (Probability: 0.02 E-value:0.33) query 89 KKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: d1qyca_ 245 EEEVLKLIADTPF-PANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYL 303 query 149 KN 150 :: d1qyca_ 304 SN 305
Intermediate <-- 0.699 --> HitDALI alignment (Z-score: 5.8 Raw score:543.30) d1qyca_ 1 ------------------------------------------------------------ 1 d1jdpa_ 1 ealppqkievlvllpqddsylfsltrvrpaieyalrsvegrllppgtrfqvayedsdcgn 60 d1qyca_ 1 ------------------------------------------------------------ 1 d1jdpa_ 61 ralfslvdrvaaargakpdlilgpvceyaaapvarlashwdlpmlsagalaagfqhkdse 120 d1qyca_ 1 ------------------------gSRSRILLIG-------aTGYIGRHVAKASLDLGHP 29 ::::::::: :::::::::::::::::: d1jdpa_ 121 yshltrvapayakmgemmlalfrhhHWSRAALVYsddklernCYFTLEGVHEVFQEEGLH 180 d1qyca_ 30 TFLLVREstassnsekaqllesfkasganivhgsiDDHASLVEAVK-NVDVVISTVgslQ 88 ::::::: ::::::::::: ::::::::: : d1jdpa_ 181 TSIYSFD------------------------etkdLDLEDIVRNIQaSERVVIMCA---S 213 d1qyca_ 89 IESQVNIIKAIKEVGT---vKRFFPSEFGNDVDnvhavepaksvfevkakvrRAIEAEGI 145 :::::::::::::::: ::::::::::::: :::::::: d1jdpa_ 214 SDTIRSIMLVAHRHGMtsgdYAFFNIELFNSSS------ygdgswkrgdkhdFEAKQAYS 267 d1qyca_ 146 PYTYVSSN---------------------------------------------------- 153 :::::::: d1jdpa_ 268 SLQTVTLLrtvkpefekfsmevkssvekqglnmedyvnmfvegfhdaillyvlalhevlr 327 d1qyca_ 154 ------------------------------------Cfagyflrslaqagltapprdkvv 177 : d1jdpa_ 328 agyskkdggkiiqqtwnrtfegiagqvsidangdryG----------------------- 364 d1qyca_ 178 ilgdgnarvvfvkeedigtftikavddprTLNK---------tlYLRLPANtlslnelva 228 :::: ::::::: d1jdpa_ 365 -------------------------dfsvIAMTdveagtqevigDYFGKEG--------- 390 d1qyca_ 229 lwekkidktlekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigpagveaS 288 : d1jdpa_ 391 ----------------------------------------------------------rF 392 d1qyca_ 289 QLYpdvkyttvdeylsnfv 307 ::: d1jdpa_ 393 EMR---------------p 396 FAST alignment (Normalized score: 2.09 Raw score:728.50) d1qyca_ 1 GSR--------------------------------------------------------- 3 d1jdpa_ 1 ---EALPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGRLLPPGTRFQVAYEDSD 57 d1qyca_ 4 ------------------------------------------------------------ 4 d1jdpa_ 58 CGNRALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHK 117 d1qyca_ 4 ------------------------------SRILLIGAT-----------GYIGRHVAKA 22 ::::: :::::::::: d1jdpa_ 118 DSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAAL----VYSDDKLERNCYFTLEGVHEV 173 d1qyca_ 23 SLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 82 ::::::::: :: d1jdpa_ 174 FQEEGLHTS-------------------------------------------------IY 184 d1qyca_ 83 TVG-SLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKS---VFEVKAKVRR 138 ::: ::: :::::::::::: :::::: :::::::::: d1jdpa_ 185 SFDETKD-LDLEDIVRNIQA--SERVVI-------------------MCASSDTIRSIML 222 d1qyca_ 139 AIEAEG-----IPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEED 193 :::::: ::::::: d1jdpa_ 223 VAHRHGMTSGDYAFFNIE------------------------------------------ 240 d1qyca_ 194 IGTFTIKAVDDPRTL----------------------------NKTLYLRLPANTL---- 221 :::::::: d1jdpa_ 241 ---------------LFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLR-----TVKP 280 d1qyca_ 222 -------------------------SLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTP 256 ::::::::::::: d1jdpa_ 281 EFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLY---------------------- 318 d1qyca_ 257 FPANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV--------- 307 d1jdpa_ 319 ---------------------------------------------------VLALHEVLR 327 d1qyca_ 308 ------------------------------------------------------------ 308 d1jdpa_ 328 AGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYGDFSVIAMTDVEAGTQEVIGDYFG 387 d1qyca_ 308 --------- 308 d1jdpa_ 388 KEGRFEMRP 396 TMalign alignment (TM-score: 0.40 Raw score:122.05) d1qyca_ 1 ------------------------------------------------------------ 1 d1jdpa_ 1 EALPPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGRLLPPGTRFQVAYEDSDCGN 60 d1qyca_ 1 ------------------------------------------------------------ 1 d1jdpa_ 61 RALFSLVDRVAAARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSE 120 d1qyca_ 1 ----------------------G---SRSRILLIGA----T-G-YIGRHVAKASLDLGHP 29 : :::::::::: : : :::::::::::::::: d1jdpa_ 121 YSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLH 180 d1qyca_ 30 TFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN-VDVVISTVGSLQ 88 :::::::: ::::::::::::::: :::::::: : d1jdpa_ 181 TSIYSFDE------------------------TKDLDLEDIVRNIQASERVVIMCA---S 213 d1qyca_ 89 IESQVNIIKAIKEVGT---VKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKV----RRAIE 141 :::::::::::::::: :::::::::::::::: :::::: ::::: d1jdpa_ 214 SDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYG----------DGSWKRGDKHDFEAK 263 d1qyca_ 142 AEGIPYTYVSSNC-FAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIK 200 ::::::::::::: :::::: d1jdpa_ 264 QAYSSLQTVTLLRT-------------------------VKPEFE--------------- 283 d1qyca_ 201 AVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPAN 260 :::::::::::::: : d1jdpa_ 284 -----------------------------------------KFSMEVKSSVEKQG----L 298 d1qyca_ 261 ISIAISHSI--F--V-------------------------------------KG------ 273 : ::::::: : : :: d1jdpa_ 299 N-MEDYVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSID 357 d1qyca_ 274 -------DQT---NFEIG-P-------AGVEASQLYPDVKY----TTVDEYLSNFV 307 : :: : ::::::: :::::: d1jdpa_ 358 ANGDRYG--DFSV---IAMTDVEAGTQEVIGDYF-GKEGRFEMRP----------- 396 HHsearch alignment (Probability: 0.27 E-value:0.41) d1qyca_ 79 VVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNV-----HAVEPAKSVFEVK 133 ::::::::::::::::::::::::: :::::::::::::::: ::::::::::::: d1jdpa_ 77 KPDLILGPVCEYAAAPVARLASHWD-LPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMG 135 d1qyca_ 134 AKVRRAIEAEGIPYTYV-SSNCFAGY 158 ::::::::::::::::: :::::::: d1jdpa_ 136 EMMLALFRHHHWSRAALVYSDDKLER 161