Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1qyca_ | Phenylcoumaran benzylic ether reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1v4va_ | UDP-N-acetylglucosamine 2-epimerase | UDP-Glycosyltransferase/glycogen phosphorylase | UDP-Glycosyltransferase/glycogen phosphorylase | α/β |
Query <-- 0.813 --> IntermediateDALI alignment (Z-score: 4.9 Raw score:359.30) query 1 gMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAfwglllLRDPekasqedks 60 :::::::::: ::::::::::::::::::::::: :::: d1qyca_ 1 -GSRSRILLIG-----atGYIGRHVAKASLDLGHPTFLLVR-----eSTAS--------- 40 query 61 lyeqafssltpREAEelplskmnlggigkkmllemmkeekapkLSDLLSGARKKEVKFY- 119 :::: :::::::::::::::: d1qyca_ 41 -----------SNSE----------------------------KAQLLESFKASGANIVh 61 query 120 AXQLsveimgfkkeelfpevqimDVKEYLKNALESDLQLFI------------------- 160 :::: :::::::::::::::::: d1qyca_ 62 GSID-------------------DHASLVEAVKNVDVVISTvgslqiesqvniikaikev 102 query 161 ------------------------------------------------------------ 161 d1qyca_ 103 gtvkrffpsefgndvdnvhavepaksvfevkakvrraieaegipytyvssncfagyflrs 162 query 161 ------------------------------------------------------------ 161 d1qyca_ 163 laqagltapprdkvvilgdgnarvvfvkeedigtftikavddprtlnktlylrlpantls 222 query 161 ------------------------------------------------------------ 161 d1qyca_ 223 lnelvalwekkidktlekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigp 282 query 161 ------------------------- 161 d1qyca_ 283 agveasqlypdvkyttvdeylsnfv 307 FAST alignment (Normalized score: 3.09 Raw score:685.40) query 1 GMENKKMNLLLFSGDYDK----ALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQ 56 :::::::: ::::::::::::::::::::::: d1qyca_ 1 -GSRSRILL---------IGATGYIGRHVAKASLDLGHPTFLLVR--------------- 35 query 57 EDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAP--------KLSDLL 108 :::::: d1qyca_ 36 ----------------------------------------------ESTASSNSEKAQLL 49 query 109 SGARKKEVKFYAXQLSVEIMGFKKEELFPEVQI----MDVKEYLKNALESDLQLFI---- 160 ::::::::::: ::::::::::::::::: d1qyca_ 50 ESFKASGANIV----------------------HGSIDDHASLVEAVKNVDVVI--STVG 85 query 161 ------------------------------------------------------------ 161 d1qyca_ 86 SLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGI 145 query 161 ------------------------------------------------------------ 161 d1qyca_ 146 PYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDP 205 query 161 ------------------------------------------------------------ 161 d1qyca_ 206 RTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAI 265 query 161 ------------------------------------------ 161 d1qyca_ 266 SHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 TMalign alignment (TM-score: 0.36 Raw score:58.19) query 1 GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKS 60 :: ::::::::::::::::::::::::: : ::::::: :: d1qyca_ 1 GS--RSRILLIGATGYIGRHVAKASLDLG----H-PTFLLVR--ES-------------- 37 query 61 LYEQAFSSLTPR-EAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFY 119 ::::::: ::: : :: ::::: :::: d1qyca_ 38 -----TASSNSEKAQL-L--------------------------ES-FKASG----ANIV 60 query 120 AXQLSVE-IMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI------------------ 160 ::::: : :::::::::: : ::::: d1qyca_ 61 HGSID-DH---------------ASLVEAVKNV--D-VVISTVGSLQIESQVNIIKAIKE 101 query 161 ------------------------------------------------------------ 161 d1qyca_ 102 VGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLR 161 query 161 ------------------------------------------------------------ 161 d1qyca_ 162 SLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTL 221 query 161 ------------------------------------------------------------ 161 d1qyca_ 222 SLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIG 281 query 161 -------------------------- 161 d1qyca_ 282 PAGVEASQLYPDVKYTTVDEYLSNFV 307 HHsearch alignment (Probability: 0.02 E-value:0.33) query 89 KKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: d1qyca_ 245 EEEVLKLIADTPF-PANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYL 303 query 149 KN 150 :: d1qyca_ 304 SN 305
Intermediate <-- 0.821 --> HitDALI alignment (Z-score: 7.8 Raw score:947.20) d1qyca_ 1 gSRSRILLIG---aTGYIGRHVAKASLDLG-HPTFLLV-RESTAssnsEKAQLLESFkaS 55 ::::::::: :::::::::::::::: ::::::: ::::: ::::::::: : d1v4va_ 1 -GMKRVVLAFgtrpEATKMAPVYLALRGIPgLKPLVLLtGQHRE----QLRQALSLF--G 53 d1qyca_ 56 GANIVHG------------siDDHASLVEAVK--NVDVVISTVgslQIESQVNIIKAIKE 101 ::::::: ::::::::::: ::::::::: :::::::::::::: d1v4va_ 54 IQEDRNLdvmqerqalpdlaaRILPQAARALKemGADYVLVHG---DTLTTFAVAWAAFL 110 d1qyca_ 102 VGTvkRFFPSEfgnDVDNvhavepAKSVfevkAKVRRAIEAegIPYTYVSSN-------- 153 ::: :::::: :::: :::: ::::::::: ::::::::: d1v4va_ 111 EGI--PVGHVE--aGLRS---gnlKEPF--peEANRRLTDV--LTDLDFAPTplakanll 159 d1qyca_ 154 ------------------------------------------------------------ 154 d1v4va_ 160 kegkreegilvtgqtgvdavllaaklgrlpeglpegpyvtvtmhrrenwpllsdlaqalk 219 d1qyca_ 154 -----------------------------------------------------------c 154 d1v4va_ 220 rvaeafphltfvypvhlnpvvreavfpvlkgvrnfvlldpleygsmaalmraslllvtds 279 d1qyca_ 155 fagyFLRSlaqaglTAPPrdkVVILgdGNAR----------------------------- 185 :::: :::: :::: :::: d1v4va_ 280 gglqEEGA---algVPVV-vlRNVT--ERPEglkagilklagtdpegvyrvvkgllenpe 333 d1qyca_ 186 ---------vVFVKEeDIGTFTIKAVDDP-rtlnktlYLRLpantlslnelvalwekkid 235 ::::: ::::::::::::: :::: d1v4va_ 334 elsrmrkaknPYGDG-KAGLMVARGVAWRlglgprpeDWLP------------------- 373 d1qyca_ 236 ktlekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigpagveasqlypdvk 295 d1v4va_ 374 ------------------------------------------------------------ 374 d1qyca_ 296 yttvdeylsnfv 307 d1v4va_ 374 ------------ 374 FAST alignment (Normalized score: 4.01 Raw score:1358.00) d1qyca_ 1 GS-RSRILLIGAT-------GYIGRHVAKASLDL-GHPTFLLVRESTASS----NSEKAQ 47 :::::: :::::::::::::: :::::::: :::::: d1v4va_ 1 --GMKRVVL----AFGTRPEATKMAPVYLALRGIPGLKPLVLL-------TGQHREQLRQ 47 d1qyca_ 48 LLESFKASGANIVHGSID-------------------DHASLVEAVK--NVDVVISTVGS 86 :::: ::::: :::::::::: ::::::: d1v4va_ 48 ALSL---FGIQE------DRNLDVMQERQALPDLAARILPQAARALKEMGADYVLV---- 94 d1qyca_ 87 LQ---IESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHA---------VEPAKSVFEVKA 134 ::::::::::::::: ::::: :::::::::::: d1v4va_ 95 --HGDTLTTFAVAWAAFLEG--IPVGH------------VEAGLRSGNLKEPFPEEANRR 138 d1qyca_ 135 KVRRAIEAEGIP-YTYVSSNCFAGYFL--------------------------------- 160 ::::: ::::: d1v4va_ 139 LTDVL-------TDLDFA---------PTPLAKANLLKEGKREEGILVTGQTGVDAVLLA 182 d1qyca_ 161 ------------------------------------------------------------ 161 d1v4va_ 183 AKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLNPVVRE 242 d1qyca_ 161 -----------------------------------------------RSLAQAGLTAP-- 171 :::: d1v4va_ 243 AVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDSGGLQEEGAALGVPV-------VV 295 d1qyca_ 172 --------------------------------PRDKVVILGDGNARV------------V 187 :::: : d1v4va_ 296 LRNVTERPEGLKAGILKLAGTDPEGVYRVVKGLLEN-----------PEELSRMRKAKNP 344 d1qyca_ 188 FVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEE 247 ::: :::::::::::: d1v4va_ 345 YGD-GKAGLMVARGVA-------------------------------------------- 359 d1qyca_ 248 VLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 d1v4va_ 360 ------------------------------------------------------------ 360 d1qyca_ 308 -------------- 308 d1v4va_ 360 WRLGLGPRPEDWLP 373 TMalign alignment (TM-score: 0.47 Raw score:143.80) d1qyca_ 1 GSRSRILLIGA-T--GYIGRHVAKASLDLG-HPTFLLVR-ESTASSNSEKAQLLESFKAS 55 : ::::::::: : ::::::::::::::: :::::::: :::: ::::::::: ::: d1v4va_ 1 G-MKRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQHRE-QLRQALSLF-GIQ-- 55 d1qyca_ 56 GANIVHGSI------------DDHASLVEAVK--NVDVVISTVGSLQIESQVNIIKAIKE 101 : :::::: ::::::::::: ::::::::: :::::::::::::: d1v4va_ 56 -E-DRNLDVMQERQALPDLAARILPQAARALKEMGADYVLVHG---DTLTTFAVAWAAFL 110 d1qyca_ 102 VGTVKRFFPSEFGNDVDNVHAVE-PAKSVFEVKAKVRRAIEAEGIPYTYVS--------- 151 :: :: :::::: ::: ::: ::::::: ::::::::: ::::::: d1v4va_ 111 EG-IP-VGHVEA--GLR---SGNL--KEPFPEE-ANRRLTDVL-TDLDFAPTPLAKANLL 159 d1qyca_ 152 -----------SNC-FA--GY--------------------------------------- 158 ::: :: :: d1v4va_ 160 KEGKREEGILVTGQTGVDAVLLAAKLGRLPEGLPEGPYVTVTMHRRENWPLLSDLAQALK 219 d1qyca_ 159 ----------------------------------------------F--LR----SLAQA 166 : :: ::::: d1v4va_ 220 RVAEAFPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS 279 d1qyca_ 167 --GL-TA----PPRDKVV-IL--GD-GNA------------------------------- 184 :: :: ::::::: :: :: ::: d1v4va_ 280 GGLQEEGAALGVPVVVLRNVTERPEGLKAGILKLAGTDPEGVYRVVKGLLENPEELSRMR 339 d1qyca_ 185 --RVVFVKEEDIGTFTIKAVDDPRT---LNK-TLYLRLPANTLSLNELVALWEKKIDKTL 238 ::::::: ::::::::::::::: : :::: : d1v4va_ 340 KAKNPYGDG-KAGLMVARGVAWRLGLGP--RP-EDWL----P------------------ 373 d1qyca_ 239 EKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTT 298 d1v4va_ 374 ------------------------------------------------------------ 374 d1qyca_ 299 VDEYLSNFV 307 d1v4va_ 374 --------- 374 HHsearch alignment (Probability: 0.06 E-value:0.04) d1qyca_ 1 GSRSRILLIGATGYIGR--HVAKASLD-LGHPTFLLVRES 37 ::::::::::::::::: :::::::: :::::::::::: d1v4va_ 1 GMKRVVLAFGTRPEATKMAPVYLALRGIPGLKPLVLLTGQ 40