Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1qyca_ | Phenylcoumaran benzylic ether reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1ispa_ | Lipase A | alpha/beta-Hydrolases | alpha/beta-Hydrolases | α/β |
Query <-- 0.813 --> IntermediateDALI alignment (Z-score: 4.9 Raw score:359.30) query 1 gMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAfwglllLRDPekasqedks 60 :::::::::: ::::::::::::::::::::::: :::: d1qyca_ 1 -GSRSRILLIG-----atGYIGRHVAKASLDLGHPTFLLVR-----eSTAS--------- 40 query 61 lyeqafssltpREAEelplskmnlggigkkmllemmkeekapkLSDLLSGARKKEVKFY- 119 :::: :::::::::::::::: d1qyca_ 41 -----------SNSE----------------------------KAQLLESFKASGANIVh 61 query 120 AXQLsveimgfkkeelfpevqimDVKEYLKNALESDLQLFI------------------- 160 :::: :::::::::::::::::: d1qyca_ 62 GSID-------------------DHASLVEAVKNVDVVISTvgslqiesqvniikaikev 102 query 161 ------------------------------------------------------------ 161 d1qyca_ 103 gtvkrffpsefgndvdnvhavepaksvfevkakvrraieaegipytyvssncfagyflrs 162 query 161 ------------------------------------------------------------ 161 d1qyca_ 163 laqagltapprdkvvilgdgnarvvfvkeedigtftikavddprtlnktlylrlpantls 222 query 161 ------------------------------------------------------------ 161 d1qyca_ 223 lnelvalwekkidktlekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigp 282 query 161 ------------------------- 161 d1qyca_ 283 agveasqlypdvkyttvdeylsnfv 307 FAST alignment (Normalized score: 3.09 Raw score:685.40) query 1 GMENKKMNLLLFSGDYDK----ALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQ 56 :::::::: ::::::::::::::::::::::: d1qyca_ 1 -GSRSRILL---------IGATGYIGRHVAKASLDLGHPTFLLVR--------------- 35 query 57 EDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAP--------KLSDLL 108 :::::: d1qyca_ 36 ----------------------------------------------ESTASSNSEKAQLL 49 query 109 SGARKKEVKFYAXQLSVEIMGFKKEELFPEVQI----MDVKEYLKNALESDLQLFI---- 160 ::::::::::: ::::::::::::::::: d1qyca_ 50 ESFKASGANIV----------------------HGSIDDHASLVEAVKNVDVVI--STVG 85 query 161 ------------------------------------------------------------ 161 d1qyca_ 86 SLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGI 145 query 161 ------------------------------------------------------------ 161 d1qyca_ 146 PYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDP 205 query 161 ------------------------------------------------------------ 161 d1qyca_ 206 RTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAI 265 query 161 ------------------------------------------ 161 d1qyca_ 266 SHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 TMalign alignment (TM-score: 0.36 Raw score:58.19) query 1 GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKS 60 :: ::::::::::::::::::::::::: : ::::::: :: d1qyca_ 1 GS--RSRILLIGATGYIGRHVAKASLDLG----H-PTFLLVR--ES-------------- 37 query 61 LYEQAFSSLTPR-EAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFY 119 ::::::: ::: : :: ::::: :::: d1qyca_ 38 -----TASSNSEKAQL-L--------------------------ES-FKASG----ANIV 60 query 120 AXQLSVE-IMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI------------------ 160 ::::: : :::::::::: : ::::: d1qyca_ 61 HGSID-DH---------------ASLVEAVKNV--D-VVISTVGSLQIESQVNIIKAIKE 101 query 161 ------------------------------------------------------------ 161 d1qyca_ 102 VGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLR 161 query 161 ------------------------------------------------------------ 161 d1qyca_ 162 SLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTL 221 query 161 ------------------------------------------------------------ 161 d1qyca_ 222 SLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIG 281 query 161 -------------------------- 161 d1qyca_ 282 PAGVEASQLYPDVKYTTVDEYLSNFV 307 HHsearch alignment (Probability: 0.02 E-value:0.33) query 89 KKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: d1qyca_ 245 EEEVLKLIADTPF-PANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYL 303 query 149 KN 150 :: d1qyca_ 304 SN 305
Intermediate <-- 0.831 --> HitDALI alignment (Z-score: 4.8 Raw score:567.00) d1qyca_ 1 gSRSRILLI-----GATGyiGRHVAKASLDLGH---PTFLLVREstassnsekaqllesf 52 :::::::: :::: ::::::::::::: :::::::: d1ispa_ 1 -EHNPVVMVhgiggASFN--FAGIKSYLVSQGWsrdKLYAVDFW---------------- 41 d1qyca_ 53 kasganivhgsiDDHASLVEAVKN--------vDVVISTVgslqiesQVNIIKAIK--EV 102 :::::::::::: ::::::: ::::::::: :: d1ispa_ 42 -----dktgtnyNNGPVLSRFVQKvldetgakkVDIVAHS-----mgGANTLYYIKnlDG 91 d1qyca_ 103 GT-VKRFFPSEfgndvdnvhavepaksvfevKAKV-rRAIEAE-----GIPYTYV----- 150 :: :::::::: :::: :::::: ::::::: d1ispa_ 92 GNkVANVVTLG-------------------gANRLttGKALPGtdpnqKILYTSIyssad 132 d1qyca_ 151 ---------------SSNCFAGyflrslaqagltapprdkvvilgdgnarvvfvkEEDIG 195 ::::::: ::::: d1ispa_ 133 mivmnylsrldgarnVQIHGVG---------------------------higllySSQVN 165 d1qyca_ 196 TFTIKAVDDprTLNKtlylrlpantlslnelvalwekkidktlekayvpeeevlkliadt 255 ::::::::: :::: d1ispa_ 166 SLIKEGLNG--GGQN--------------------------------------------- 178 d1qyca_ 256 pfpanisiaishsifvkgdqtnfeigpagveasqlypdvkyttvdeylsnfv 307 d1ispa_ 179 ---------------------------------------------------t 179 FAST alignment (Normalized score: 3.81 Raw score:892.40) d1qyca_ 1 GSRSRILLIGATGY---------IGRHVAKASLDLGH---PTFLLVRESTASSNSEKAQL 48 ::::::: :::::::::::::: ::::::: d1ispa_ 1 -EHNPVVM------VHGIGGASFNFAGIKSYLVSQGWSRDKLYAVDF------------- 40 d1qyca_ 49 LESFKASGANIVHGSID---------DHASLVEAVKNV---------DVVISTVGSLQ-I 89 ::::::::::: ::::: : d1ispa_ 41 -----------------WDKTGTNYNNGPVLSRFVQK-VLDETGAKKVDIVA------HS 76 d1qyca_ 90 ESQVNIIKAIKE---VGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAE--- 143 :::::::::::: ::::::::: d1ispa_ 77 MGGANTLYYIKNLDGGNKVANVVT---------------------------------LGG 103 d1qyca_ 144 -----------------GIPYTY---------------------VSSNCFAGYFLRSLAQ 165 :::::: :::: d1ispa_ 104 ANRLTTGKALPGTDPNQKILYTSIYSSADMIVMNYLSRLDGARNVQIH------------ 151 d1qyca_ 166 AGLTAPPRDKVVILGDGNARVVFVK---------EEDIGTFTIKAVDDPRTLNKTLYLRL 216 ::::::::::: d1ispa_ 152 -------------------------GVGHIGLLYSSQVNSLIKEG--------------- 171 d1qyca_ 217 PANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQT 276 d1ispa_ 172 ------------------------------------------------------------ 172 d1qyca_ 277 NFEIGPAGVEASQLYPDVKYTTVDEYLSNFV-------- 307 d1ispa_ 172 -------------------------------LNGGGQNT 179 TMalign alignment (TM-score: 0.34 Raw score:104.12) d1qyca_ 1 GSRSRILLIG-----ATGYIGRHVAKASLD-LGH--PTFLLVRES--TASSNSEKAQLLE 50 ::::::::: ::: :::::::::: ::: ::::::::: d1ispa_ 1 -EHNPVVMVHGIGGASFN--FAGIKSYLVSQGWSRDKLYAVDFWDKT------------- 44 d1qyca_ 51 SFKASGANIVHGSI-DDHASLVEAVK--N------VDVVISTVGSLQIESQVNIIKAIK- 100 ::: ::::::::::: : :::::::: : :::::::::: d1ispa_ 45 -----------GTNYNNGPVLSRFVQKVLDETGAKKVDIVAHS----M-GGANTLYYIKN 88 d1qyca_ 101 -EV-GTVKRFFPSE------------------------FGNDVDNVHAVEPAKSVFEVKA 134 :: :::::::::: :::: : :: ::: :: d1ispa_ 89 LDGGNKVANVVTLGGANRLTTGKALPGTDPNQKILYTSIYSS-----A--DM-IVM--NY 138 d1qyca_ 135 KVRRAIEAEGIPYTYVSSNCFA-GYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEED 193 :::: : : :::::::::: :: ::::: d1ispa_ 139 LSRL--D--G--ARNVQIHGVGH-IG-----------------------------LLYSS 162 d1qyca_ 194 IGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIA 253 :::::::::::: :::: d1ispa_ 163 QVNSLIKEGLNG-GGQN------------------------------------------- 178 d1qyca_ 254 DTPFPANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 : d1ispa_ 179 -----------------------------T------------------------ 179 HHsearch alignment (Probability: 0.21 E-value:0.04) d1qyca_ 6 ILLIGA--TGYIGRHVAKASLDLGHPTFLLVRES 37 :::::: :::::::::::::::::::::::::: d1ispa_ 6 VMVHGIGGASFNFAGIKSYLVSQGWSRDKLYAVD 39