Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1qyca_ | Phenylcoumaran benzylic ether reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1uxoa_ | Hypothetical protein YdeN | alpha/beta-Hydrolases | alpha/beta-Hydrolases | α/β |
Query <-- 0.813 --> IntermediateDALI alignment (Z-score: 4.9 Raw score:359.30) query 1 gMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAfwglllLRDPekasqedks 60 :::::::::: ::::::::::::::::::::::: :::: d1qyca_ 1 -GSRSRILLIG-----atGYIGRHVAKASLDLGHPTFLLVR-----eSTAS--------- 40 query 61 lyeqafssltpREAEelplskmnlggigkkmllemmkeekapkLSDLLSGARKKEVKFY- 119 :::: :::::::::::::::: d1qyca_ 41 -----------SNSE----------------------------KAQLLESFKASGANIVh 61 query 120 AXQLsveimgfkkeelfpevqimDVKEYLKNALESDLQLFI------------------- 160 :::: :::::::::::::::::: d1qyca_ 62 GSID-------------------DHASLVEAVKNVDVVISTvgslqiesqvniikaikev 102 query 161 ------------------------------------------------------------ 161 d1qyca_ 103 gtvkrffpsefgndvdnvhavepaksvfevkakvrraieaegipytyvssncfagyflrs 162 query 161 ------------------------------------------------------------ 161 d1qyca_ 163 laqagltapprdkvvilgdgnarvvfvkeedigtftikavddprtlnktlylrlpantls 222 query 161 ------------------------------------------------------------ 161 d1qyca_ 223 lnelvalwekkidktlekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigp 282 query 161 ------------------------- 161 d1qyca_ 283 agveasqlypdvkyttvdeylsnfv 307 FAST alignment (Normalized score: 3.09 Raw score:685.40) query 1 GMENKKMNLLLFSGDYDK----ALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQ 56 :::::::: ::::::::::::::::::::::: d1qyca_ 1 -GSRSRILL---------IGATGYIGRHVAKASLDLGHPTFLLVR--------------- 35 query 57 EDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAP--------KLSDLL 108 :::::: d1qyca_ 36 ----------------------------------------------ESTASSNSEKAQLL 49 query 109 SGARKKEVKFYAXQLSVEIMGFKKEELFPEVQI----MDVKEYLKNALESDLQLFI---- 160 ::::::::::: ::::::::::::::::: d1qyca_ 50 ESFKASGANIV----------------------HGSIDDHASLVEAVKNVDVVI--STVG 85 query 161 ------------------------------------------------------------ 161 d1qyca_ 86 SLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGI 145 query 161 ------------------------------------------------------------ 161 d1qyca_ 146 PYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDP 205 query 161 ------------------------------------------------------------ 161 d1qyca_ 206 RTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAI 265 query 161 ------------------------------------------ 161 d1qyca_ 266 SHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 TMalign alignment (TM-score: 0.36 Raw score:58.19) query 1 GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKS 60 :: ::::::::::::::::::::::::: : ::::::: :: d1qyca_ 1 GS--RSRILLIGATGYIGRHVAKASLDLG----H-PTFLLVR--ES-------------- 37 query 61 LYEQAFSSLTPR-EAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFY 119 ::::::: ::: : :: ::::: :::: d1qyca_ 38 -----TASSNSEKAQL-L--------------------------ES-FKASG----ANIV 60 query 120 AXQLSVE-IMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI------------------ 160 ::::: : :::::::::: : ::::: d1qyca_ 61 HGSID-DH---------------ASLVEAVKNV--D-VVISTVGSLQIESQVNIIKAIKE 101 query 161 ------------------------------------------------------------ 161 d1qyca_ 102 VGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLR 161 query 161 ------------------------------------------------------------ 161 d1qyca_ 162 SLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTL 221 query 161 ------------------------------------------------------------ 161 d1qyca_ 222 SLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIG 281 query 161 -------------------------- 161 d1qyca_ 282 PAGVEASQLYPDVKYTTVDEYLSNFV 307 HHsearch alignment (Probability: 0.02 E-value:0.33) query 89 KKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: d1qyca_ 245 EEEVLKLIADTPF-PANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYL 303 query 149 KN 150 :: d1qyca_ 304 SN 305
Intermediate <-- 0.958 --> HitDALI alignment (Z-score: 4.1 Raw score:496.30) d1qyca_ 1 gsRSRILLIG-----aTGYIGRHVAKASLDLGHPTFLLVREStassnsekaqllesfkas 55 :::::::: :::::::::::::::::::::::::: d1uxoa_ 1 --TKQVYIIHgyrassTNHWFPWLKKRLLADGVQADILNMPN------------------ 40 d1qyca_ 56 ganivhgsiDDHASLVEA---vknvDVVISTVgslqiesQVNIIKAIKEV---gTVKRFF 109 ::::::::: ::::::: ::::::::::: :::::: d1uxoa_ 41 --plqprleDWLDTLSLYqhtlhenTYLVAHS-----lgCPAILRFLEHLqlraALGGII 93 d1qyca_ 110 PSE----------------------------------FGNDvdnvhavepaksVFEVKAK 135 ::: :::: ::::::: d1uxoa_ 94 LVSgfakslptlqmldeftqgsfdhqkiiesakhravIASK-------ddqivPFSFSKD 146 d1qyca_ 136 VRRAIEaegipytyvssncFAGYflrslaqagltapprdkvvilgdgnarvvfvkEEDIG 195 :::::: :::: ::::: d1uxoa_ 147 LAQQIDaalyevqhgghflEDEG------------------------------ftSLPIV 176 d1qyca_ 196 TFTIKAVDDPrtlnktlylrlpantlslnelvalwekkidktlekayvpeeevlkliadt 255 :::::::::: d1uxoa_ 177 YDVLTSYFSK-------------------------------------------------- 186 d1qyca_ 256 pfpanisiaishsifvkgdqtnfeigpagveasqlypdvkyttvdeylsnfv 307 d1uxoa_ 187 ---------------------------------------------------- 187 FAST alignment (Normalized score: 3.98 Raw score:951.90) d1qyca_ 1 GSRSRILLI------GATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKA 54 :::::: :::::::::::::::::::::::::: d1uxoa_ 1 --TKQVYI-IHGYRASSTNHWFPWLKKRLLADGVQADILNM------------------- 38 d1qyca_ 55 SGANIVHGSI-----DDHASLVEAVKNV---------DVVISTVGSLQIE---SQVNIIK 97 ::::::::::: ::::: ::::::: d1uxoa_ 39 ----------PNPLQPRLEDWLDTLS--LYQHTLHENTYLVA--------HSLGCPAILR 78 d1qyca_ 98 AIKEVG----TVKRFFPSEFGNDVDNVHAVEPAKS------------------------- 128 ::::: ::::::: d1uxoa_ 79 FLEHL-QLRAALGGIIL------------------VSGFAKSLPTLQMLDEFTQGSFDHQ 119 d1qyca_ 129 --------------------VFEVKAKVRRAIEAEGI-PYTYVSSNCFAGYFLRSLAQAG 167 ::::::::::: :::::::: d1uxoa_ 120 KIIESAKHRAVIASKDDQIVPFSFSKDLAQQ------IDAALYEVQ-------------- 159 d1qyca_ 168 LTAPPRDKVVILGDGNARVVFVKE-------------EDIGTFTIKAVDDPRTLNKTLYL 214 :::::::::::: d1uxoa_ 160 ------------------------HGGHFLEDEGFTSLPIVYDVLTSYF----------- 184 d1qyca_ 215 RLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGD 274 d1uxoa_ 185 ------------------------------------------------------------ 185 d1qyca_ 275 QTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV-- 307 d1uxoa_ 185 ---------------------------------SK 186 TMalign alignment (TM-score: 0.34 Raw score:103.57) d1qyca_ 1 GSRSRILLIG-----ATGYIGRHVAKASLDLGHPTFLLVRES----TASSNSEKAQLLES 51 :::::::: ::::::::::::::::::::::::::: d1uxoa_ 1 --TKQVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQP-------------- 44 d1qyca_ 52 FKASGANIVHGSI-DDHASLVEAVKNV---DVVISTVGSLQIESQVNIIKAIKEV-G--T 104 :: ::::::::::::: :::::: :::::::::::::: : : d1uxoa_ 45 -----------RLEDWLDTLSLYQHTLHENTYLVAH-----SLGCPAILRFLEHLQLRAA 88 d1qyca_ 105 VKRFFPSE----------------------------------FGNDVDNVHAVEPAKSVF 130 :::::::: ::: : : : : :: d1uxoa_ 89 LGGIILVSGFAKSLPTLQMLDEFTQGSFDHQKIIESAKHRAVIAS-K--D-D---Q--IV 139 d1qyca_ 131 EVKAKVRRAIEAEGIPYTYVSSNC--F-AGYFLRSLAQAGLTAPPRDKVVILGDGNARVV 187 : :::::::::: ::::::::::: : :::: d1uxoa_ 140 P-FSFSKDLAQQ-IDAALYEVQHGGHFL-EDEG--------------------------- 169 d1qyca_ 188 FVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEE 247 ::: :: :::::::::::: d1uxoa_ 170 --FTS-LP-IVYDVLTSYFSK--------------------------------------- 186 d1qyca_ 248 VLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 d1uxoa_ 187 ------------------------------------------------------------ 187 HHsearch alignment (Probability: 0.74 E-value:0.00) d1qyca_ 2 SRSRILLIGATGY----IGRHVAKASLDLGHPTFLLVRESTASSN 42 ::::::::::::: :::::::::::::::::::::::::::: d1uxoa_ 1 TKQVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQPR 45