Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1qyca_ | Phenylcoumaran benzylic ether reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1uana_ | Hypothetical protein TT1542 | LmbE-like | LmbE-like | α/β |
Query <-- 0.813 --> IntermediateDALI alignment (Z-score: 4.9 Raw score:359.30) query 1 gMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAfwglllLRDPekasqedks 60 :::::::::: ::::::::::::::::::::::: :::: d1qyca_ 1 -GSRSRILLIG-----atGYIGRHVAKASLDLGHPTFLLVR-----eSTAS--------- 40 query 61 lyeqafssltpREAEelplskmnlggigkkmllemmkeekapkLSDLLSGARKKEVKFY- 119 :::: :::::::::::::::: d1qyca_ 41 -----------SNSE----------------------------KAQLLESFKASGANIVh 61 query 120 AXQLsveimgfkkeelfpevqimDVKEYLKNALESDLQLFI------------------- 160 :::: :::::::::::::::::: d1qyca_ 62 GSID-------------------DHASLVEAVKNVDVVISTvgslqiesqvniikaikev 102 query 161 ------------------------------------------------------------ 161 d1qyca_ 103 gtvkrffpsefgndvdnvhavepaksvfevkakvrraieaegipytyvssncfagyflrs 162 query 161 ------------------------------------------------------------ 161 d1qyca_ 163 laqagltapprdkvvilgdgnarvvfvkeedigtftikavddprtlnktlylrlpantls 222 query 161 ------------------------------------------------------------ 161 d1qyca_ 223 lnelvalwekkidktlekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigp 282 query 161 ------------------------- 161 d1qyca_ 283 agveasqlypdvkyttvdeylsnfv 307 FAST alignment (Normalized score: 3.09 Raw score:685.40) query 1 GMENKKMNLLLFSGDYDK----ALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQ 56 :::::::: ::::::::::::::::::::::: d1qyca_ 1 -GSRSRILL---------IGATGYIGRHVAKASLDLGHPTFLLVR--------------- 35 query 57 EDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAP--------KLSDLL 108 :::::: d1qyca_ 36 ----------------------------------------------ESTASSNSEKAQLL 49 query 109 SGARKKEVKFYAXQLSVEIMGFKKEELFPEVQI----MDVKEYLKNALESDLQLFI---- 160 ::::::::::: ::::::::::::::::: d1qyca_ 50 ESFKASGANIV----------------------HGSIDDHASLVEAVKNVDVVI--STVG 85 query 161 ------------------------------------------------------------ 161 d1qyca_ 86 SLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGI 145 query 161 ------------------------------------------------------------ 161 d1qyca_ 146 PYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDP 205 query 161 ------------------------------------------------------------ 161 d1qyca_ 206 RTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAI 265 query 161 ------------------------------------------ 161 d1qyca_ 266 SHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 TMalign alignment (TM-score: 0.36 Raw score:58.19) query 1 GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKS 60 :: ::::::::::::::::::::::::: : ::::::: :: d1qyca_ 1 GS--RSRILLIGATGYIGRHVAKASLDLG----H-PTFLLVR--ES-------------- 37 query 61 LYEQAFSSLTPR-EAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFY 119 ::::::: ::: : :: ::::: :::: d1qyca_ 38 -----TASSNSEKAQL-L--------------------------ES-FKASG----ANIV 60 query 120 AXQLSVE-IMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI------------------ 160 ::::: : :::::::::: : ::::: d1qyca_ 61 HGSID-DH---------------ASLVEAVKNV--D-VVISTVGSLQIESQVNIIKAIKE 101 query 161 ------------------------------------------------------------ 161 d1qyca_ 102 VGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLR 161 query 161 ------------------------------------------------------------ 161 d1qyca_ 162 SLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTL 221 query 161 ------------------------------------------------------------ 161 d1qyca_ 222 SLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIG 281 query 161 -------------------------- 161 d1qyca_ 282 PAGVEASQLYPDVKYTTVDEYLSNFV 307 HHsearch alignment (Probability: 0.02 E-value:0.33) query 89 KKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: d1qyca_ 245 EEEVLKLIADTPF-PANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYL 303 query 149 KN 150 :: d1qyca_ 304 SN 305
Intermediate <-- 1.076 --> HitDALI alignment (Z-score: 7.3 Raw score:664.90) d1qyca_ 1 gsrSRILLIG-----ATGYiGRHVAKASLDLGHPTFLLV-REST--ASSN--SEKAQLLE 50 ::::::: :::: ::::::::::::::::::: :::: :::: :::::::: d1uana_ 1 --mLDLLVVAphpddGELG-CGGTLARAKAEGLSTGILDlTRGEmgSKGTpeEREKEVAE 57 d1qyca_ 51 SFKASGA-NIVHG---------sidDHASLVEAVK--NVDVVIST---vgSLQIES-QVN 94 ::::::: ::::: :::::::::: :::::::: :::::: ::: d1uana_ 58 ASRILGLdFRGNLgfpdggladvpeQRLKLAQALRrlRPRVVFAPleadrHPDHTAaSRL 117 d1qyca_ 95 IIKAIKEVG-----------TVKRFFPSEfgndvdnvhavepaksVFEVkakvrraieae 143 ::::::::: ::::::::: :::: d1uana_ 118 AVAAVHLAGlrkaplegepfRVERLFFYP---------------gNHPF----------- 151 d1qyca_ 144 gipytYVSS-------------------------------nCFAGYflrslaqagltapp 172 :::: ::::: d1uana_ 152 ---apSFLVkisafidqweaavlayrsqftvgpkgvearkaMRRYW-------------- 194 d1qyca_ 173 rdkvvilgdgnarvVFVKEedigtftikavddprtLNKTlylrlpantlslnelvalwek 232 ::::: :::: d1uana_ 195 ----------gnylGVDYA-----------epfvsPLPV--------------------- 212 d1qyca_ 233 kidktlekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigpagVEASQLYp 292 ::::::: d1uana_ 213 ----------------------------------------------------LYVPWSR- 219 d1qyca_ 293 dvkyttvdeylsnfv 307 d1uana_ 220 --------------a 220 FAST alignment (Normalized score: 3.63 Raw score:942.40) d1qyca_ 1 GSRS--RILLIGAT--------GYIGRHVAKASLDLGHPTFLLVRESTAS---------S 41 :::: ::::::::::::::::::::::: : d1uana_ 1 ----MLDLLV----VAPHPDDGELGCGGTLARAKAEGLSTGILDL-----TRGEMGSKGT 47 d1qyca_ 42 NSEKAQLLESFKA-SGA-NIVHGSID------------DHASLVEAVK--NVDVVISTVG 85 ::::::::::::: ::: ::::: :::::::::: :::::: d1uana_ 48 PEEREKEVAEASRILGLDFRGNL---GFPDGGLADVPEQRLKLAQALRRLRPRVVF---- 100 d1qyca_ 86 -------SLQIE-SQVNIIKAIKEV------------GTVKRFFPSEFGNDVDNVHAVEP 125 ::::: ::::::::::: :::::::::::::: d1uana_ 101 APLEADRHPDHTAASRLAVAAVHL-AGLRKAPLEGEPFRVERLFFYPGNHP--------- 150 d1qyca_ 126 AKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNAR 185 d1uana_ 151 ------------------------------------------------------------ 151 d1qyca_ 186 VVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPE 245 d1uana_ 151 ------------------------------------------------------------ 151 d1qyca_ 246 EEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSN 305 d1uana_ 151 ------------------------------------------------------------ 151 d1qyca_ 306 FV---------------------------------------------------------- 307 d1uana_ 151 --FAPSFLVKISAFIDQWEAAVLAYRSQFTVGPKGVEARKAMRRYWGNYLGVDYAEPFVS 208 d1qyca_ 308 ------------ 308 d1uana_ 209 PLPVLYVPWSRA 220 TMalign alignment (TM-score: 0.33 Raw score:101.94) d1qyca_ 1 GSRSRILLIG-ATGYIGRHVAKASLDL-G--HPTFLLV--R-ES--TASSN-SEKAQLLE 50 :::::::: :::::::::::::::: : ::::::: : : ::::: :::::::: d1uana_ 1 --MLDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRG-EMGSKGTPEEREKEVAE 57 d1qyca_ 51 SFKASGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIE---SQVNIIKAIKEVGTVKR 107 :::::::::: ::::: ::::::: :::::::::: : :::: d1uana_ 58 ASRILGLDFR-GNLGF-----------------PDGGLADVPEQRLKLAQALR-R-LRPR 97 d1qyca_ 108 FFPSEFGNDV-DNVHAVEPAKSVFEVKAKVRRAIEAEG-----------IPYTYVSSNCF 155 :::::::: : :: ::::::::::::::::: ::::::::::: d1uana_ 98 VVFAPLEA-DR-------HP-DHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGN 148 d1qyca_ 156 AGYFL------------------------------RSLAQAGLTA-----PPRDKVVILG 180 ::: :: d1uana_ 149 --HPFAPSFLVKISAFIDQWEAAVLAYRSQFTVGP--------KGVEARK---------- 188 d1qyca_ 181 DGNARVVFVK--E-------EDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWE 231 ::: : ::: :: ::: d1uana_ 189 -------AMRRYWGNYLGVDYAE--PF------------VSP------------------ 209 d1qyca_ 232 KKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPAGVEASQLY 291 :::::::: d1uana_ 210 ----------------------------------------------------LPVLYVPW 217 d1qyca_ 292 PDVKYTTVDEYLSNFV 307 ::: d1uana_ 218 SRA------------- 220 HHsearch alignment (Probability: 0.10 E-value:0.81) d1qyca_ 185 RVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAY 242 :::::::::::::::::::::: ::: ::::::::::::::::::::::::: d1uana_ 153 PSFLVKISAFIDQWEAAVLAYR--SQF------TVGPKGVEARKAMRRYWGNYLGVDY 202