Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1qyca_ | Phenylcoumaran benzylic ether reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1qkia1 | Glucose 6-phosphate dehydrogenase, N-terminal domain | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 0.813 --> IntermediateDALI alignment (Z-score: 4.9 Raw score:359.30) query 1 gMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAfwglllLRDPekasqedks 60 :::::::::: ::::::::::::::::::::::: :::: d1qyca_ 1 -GSRSRILLIG-----atGYIGRHVAKASLDLGHPTFLLVR-----eSTAS--------- 40 query 61 lyeqafssltpREAEelplskmnlggigkkmllemmkeekapkLSDLLSGARKKEVKFY- 119 :::: :::::::::::::::: d1qyca_ 41 -----------SNSE----------------------------KAQLLESFKASGANIVh 61 query 120 AXQLsveimgfkkeelfpevqimDVKEYLKNALESDLQLFI------------------- 160 :::: :::::::::::::::::: d1qyca_ 62 GSID-------------------DHASLVEAVKNVDVVISTvgslqiesqvniikaikev 102 query 161 ------------------------------------------------------------ 161 d1qyca_ 103 gtvkrffpsefgndvdnvhavepaksvfevkakvrraieaegipytyvssncfagyflrs 162 query 161 ------------------------------------------------------------ 161 d1qyca_ 163 laqagltapprdkvvilgdgnarvvfvkeedigtftikavddprtlnktlylrlpantls 222 query 161 ------------------------------------------------------------ 161 d1qyca_ 223 lnelvalwekkidktlekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigp 282 query 161 ------------------------- 161 d1qyca_ 283 agveasqlypdvkyttvdeylsnfv 307 FAST alignment (Normalized score: 3.09 Raw score:685.40) query 1 GMENKKMNLLLFSGDYDK----ALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQ 56 :::::::: ::::::::::::::::::::::: d1qyca_ 1 -GSRSRILL---------IGATGYIGRHVAKASLDLGHPTFLLVR--------------- 35 query 57 EDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAP--------KLSDLL 108 :::::: d1qyca_ 36 ----------------------------------------------ESTASSNSEKAQLL 49 query 109 SGARKKEVKFYAXQLSVEIMGFKKEELFPEVQI----MDVKEYLKNALESDLQLFI---- 160 ::::::::::: ::::::::::::::::: d1qyca_ 50 ESFKASGANIV----------------------HGSIDDHASLVEAVKNVDVVI--STVG 85 query 161 ------------------------------------------------------------ 161 d1qyca_ 86 SLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGI 145 query 161 ------------------------------------------------------------ 161 d1qyca_ 146 PYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDP 205 query 161 ------------------------------------------------------------ 161 d1qyca_ 206 RTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAI 265 query 161 ------------------------------------------ 161 d1qyca_ 266 SHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 TMalign alignment (TM-score: 0.36 Raw score:58.19) query 1 GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKS 60 :: ::::::::::::::::::::::::: : ::::::: :: d1qyca_ 1 GS--RSRILLIGATGYIGRHVAKASLDLG----H-PTFLLVR--ES-------------- 37 query 61 LYEQAFSSLTPR-EAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFY 119 ::::::: ::: : :: ::::: :::: d1qyca_ 38 -----TASSNSEKAQL-L--------------------------ES-FKASG----ANIV 60 query 120 AXQLSVE-IMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI------------------ 160 ::::: : :::::::::: : ::::: d1qyca_ 61 HGSID-DH---------------ASLVEAVKNV--D-VVISTVGSLQIESQVNIIKAIKE 101 query 161 ------------------------------------------------------------ 161 d1qyca_ 102 VGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLR 161 query 161 ------------------------------------------------------------ 161 d1qyca_ 162 SLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTL 221 query 161 ------------------------------------------------------------ 161 d1qyca_ 222 SLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIG 281 query 161 -------------------------- 161 d1qyca_ 282 PAGVEASQLYPDVKYTTVDEYLSNFV 307 HHsearch alignment (Probability: 0.02 E-value:0.33) query 89 KKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: d1qyca_ 245 EEEVLKLIADTPF-PANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYL 303 query 149 KN 150 :: d1qyca_ 304 SN 305
Intermediate <-- 1.275 --> HitDALI alignment (Z-score: 7.6 Raw score:802.90) d1qyca_ 1 ----gSRSRILLIGATGYIGR-HVAKASLDLG--------HPTFLLVREStassnsekaQ 47 :::::::::::::::: :::::::::: :::::::::: : d1qkia1 1 vchqsDTHIFIIMGASGDLAKkKIYPTIWWLFrdgllpenTFIVGYARSR----ltvadI 56 d1qyca_ 48 LLES---------------fkASGANIVHGSIDDHASLVEAVKN----------vDVVIS 82 :::: ::::::::::::::::::::::: ::::: d1qkia1 57 RKQSepffkatpeeklkledfFARNSYVAGQYDDAASYQRLNSHmnalhlgsqanRLFYL 116 d1qyca_ 83 TVGslqIESQVNIIKAIKEVGT----vKRFFPSEfgndvdnvhavepakSVFEVKAKVRR 138 ::: :::::::::::::::: ::::::: ::::::::::: d1qkia1 117 ALP---PTVYEAVTKNIHESCMsqigwNRIIVEK------------pfgRDLQSSDRLSN 161 d1qyca_ 139 AIEAEGI--PYTYVssncfagyflrslaqagltapprdkvvilgdgnarvvfvkeeDIGT 196 ::::::: ::::: :::: d1qkia1 162 HISSLFRedQIYRI------------------------------------------DAYE 179 d1qyca_ 197 FTIKAVDDPRTlnktlylrlpantlslnelvalwekkidktlekayvpeeevlkliadtp 256 ::::::::::: d1qkia1 180 RLILDVFCGSQ------------------------------------------------- 190 d1qyca_ 257 fpanisiaishsifvkgdqtnfeigpagveasqlypdvkyttvdeylsnfv 307 d1qkia1 191 --------------------------------------------------- 191 FAST alignment (Normalized score: 5.31 Raw score:1283.00) d1qyca_ 1 ----GSRSRILLIGATGYIGR-HVAKASLDL---------GHPTFLLVRESTASSNSEKA 46 ::::::::::::::::: :::::::: :::::::: d1qkia1 1 VCHQSDTHIFIIMGASGDLAKKKIYPTIWW-LFRDGLLPENTFIVGYA------------ 47 d1qyca_ 47 QLLESFKA-------------------------------SGANIVHGSIDDHASLVEAVK 75 ::::::::::::::::::::: d1qkia1 48 --------RSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNS 99 d1qyca_ 76 NV------------DVVISTVGSLQIESQVNIIKAIKEVGTV--------KRFFPSEFGN 115 ::::::: :::::::::::::: ::::: d1qkia1 100 --HMNALHLGSQANRLFYLAL---PPTVYEAVTKNIHE----SCMSQIGWNRIIV----- 145 d1qyca_ 116 DVDNVHAVEPAKS------VFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLT 169 :::::::::::::: d1qkia1 146 -------------EKPFGRDLQSSDRLSNHISS--------------------------- 165 d1qyca_ 170 APPRDKVVILGDGNARVVFVKEE----------DIGTFTIKAVDDPRTLNKTLYLRLPAN 219 ::::::::::::: d1qkia1 166 -----------------------LFREDQIYRIDAYERLILDVFCG-------------- 188 d1qyca_ 220 TLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFE 279 d1qkia1 189 ------------------------------------------------------------ 189 d1qyca_ 280 IGPAGVEASQLYPDVKYTTVDEYLSNFV-- 307 d1qkia1 189 ----------------------------SQ 190 TMalign alignment (TM-score: 0.39 Raw score:121.04) d1qyca_ 1 ----GS-RSRILLIGATGYIGR-HVAKASLDLG--------HPTFLLVRESTA---SSNS 43 : ::::::::::::::: :::::::::: :::::::::::: d1qkia1 1 VCHQ-SDTHIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVAD---- 55 d1qyca_ 44 EKAQLLESFK-----------A-SG--ANIVHGSI-D--DHASLVEAVK----N--VD-V 79 :::::::: : :: :::::::: : :::::::::: : :: : d1qkia1 56 --IRKQSEPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRL 113 d1qyca_ 80 VISTVGSLQIESQ-VNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRR 138 ::::::::::::: :::::::: ::::::::: ::: :: : :::::::::::::: d1qkia1 114 FYLALPPTVYEAVTKNIHESCM-SQIGWNRII-VEK-PF----G--RDLQSSDRLSNHIS 164 d1qyca_ 139 AIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFT 198 ::: :::::::: :::::: d1qkia1 165 SLF--REDQIYRI-----------------------------------------DAYERL 181 d1qyca_ 199 IKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFP 258 ::::::: : : d1qkia1 182 ILDVFCG-S--Q------------------------------------------------ 190 d1qyca_ 259 ANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 d1qkia1 191 ------------------------------------------------- 191 HHsearch alignment (Probability: 0.85 E-value:0.00) d1qyca_ 5 RILLIGATGYIGRHV---------AKASLDLGHPTFLLVRESTASSNSEKAQLLESFKAS 55 ::::::::::::::: :::::::::::::::::::::::::: :: d1qkia1 9 IFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRK--QS------ 60 d1qyca_ 56 GANIVHGSIDDHASLVEAVKNVDVVIST-VGSLQIESQVNIIKAIKEVGTVKRFFPSEF 113 ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: d1qkia1 61 -EPFFKATPEEKLKLEDFFARNSYVAGQYDDAASYQRLNSHMNALHLGSQANRLFYLAL 118