Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1qyca_ | Phenylcoumaran benzylic ether reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1qlwa_ | A novel bacterial esterase | alpha/beta-Hydrolases | alpha/beta-Hydrolases | α/β |
Query <-- 0.813 --> IntermediateDALI alignment (Z-score: 4.9 Raw score:359.30) query 1 gMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAfwglllLRDPekasqedks 60 :::::::::: ::::::::::::::::::::::: :::: d1qyca_ 1 -GSRSRILLIG-----atGYIGRHVAKASLDLGHPTFLLVR-----eSTAS--------- 40 query 61 lyeqafssltpREAEelplskmnlggigkkmllemmkeekapkLSDLLSGARKKEVKFY- 119 :::: :::::::::::::::: d1qyca_ 41 -----------SNSE----------------------------KAQLLESFKASGANIVh 61 query 120 AXQLsveimgfkkeelfpevqimDVKEYLKNALESDLQLFI------------------- 160 :::: :::::::::::::::::: d1qyca_ 62 GSID-------------------DHASLVEAVKNVDVVISTvgslqiesqvniikaikev 102 query 161 ------------------------------------------------------------ 161 d1qyca_ 103 gtvkrffpsefgndvdnvhavepaksvfevkakvrraieaegipytyvssncfagyflrs 162 query 161 ------------------------------------------------------------ 161 d1qyca_ 163 laqagltapprdkvvilgdgnarvvfvkeedigtftikavddprtlnktlylrlpantls 222 query 161 ------------------------------------------------------------ 161 d1qyca_ 223 lnelvalwekkidktlekayvpeeevlkliadtpfpanisiaishsifvkgdqtnfeigp 282 query 161 ------------------------- 161 d1qyca_ 283 agveasqlypdvkyttvdeylsnfv 307 FAST alignment (Normalized score: 3.09 Raw score:685.40) query 1 GMENKKMNLLLFSGDYDK----ALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQ 56 :::::::: ::::::::::::::::::::::: d1qyca_ 1 -GSRSRILL---------IGATGYIGRHVAKASLDLGHPTFLLVR--------------- 35 query 57 EDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAP--------KLSDLL 108 :::::: d1qyca_ 36 ----------------------------------------------ESTASSNSEKAQLL 49 query 109 SGARKKEVKFYAXQLSVEIMGFKKEELFPEVQI----MDVKEYLKNALESDLQLFI---- 160 ::::::::::: ::::::::::::::::: d1qyca_ 50 ESFKASGANIV----------------------HGSIDDHASLVEAVKNVDVVI--STVG 85 query 161 ------------------------------------------------------------ 161 d1qyca_ 86 SLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGI 145 query 161 ------------------------------------------------------------ 161 d1qyca_ 146 PYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDP 205 query 161 ------------------------------------------------------------ 161 d1qyca_ 206 RTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAI 265 query 161 ------------------------------------------ 161 d1qyca_ 266 SHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307 TMalign alignment (TM-score: 0.36 Raw score:58.19) query 1 GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKS 60 :: ::::::::::::::::::::::::: : ::::::: :: d1qyca_ 1 GS--RSRILLIGATGYIGRHVAKASLDLG----H-PTFLLVR--ES-------------- 37 query 61 LYEQAFSSLTPR-EAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKKEVKFY 119 ::::::: ::: : :: ::::: :::: d1qyca_ 38 -----TASSNSEKAQL-L--------------------------ES-FKASG----ANIV 60 query 120 AXQLSVE-IMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI------------------ 160 ::::: : :::::::::: : ::::: d1qyca_ 61 HGSID-DH---------------ASLVEAVKNV--D-VVISTVGSLQIESQVNIIKAIKE 101 query 161 ------------------------------------------------------------ 161 d1qyca_ 102 VGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLR 161 query 161 ------------------------------------------------------------ 161 d1qyca_ 162 SLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTL 221 query 161 ------------------------------------------------------------ 161 d1qyca_ 222 SLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIG 281 query 161 -------------------------- 161 d1qyca_ 282 PAGVEASQLYPDVKYTTVDEYLSNFV 307 HHsearch alignment (Probability: 0.02 E-value:0.33) query 89 KKMLLEMMKEEKAPKLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: d1qyca_ 245 EEEVLKLIADTPF-PANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYL 303 query 149 KN 150 :: d1qyca_ 304 SN 305
Intermediate <-- 1.300 --> HitDALI alignment (Z-score: 4.5 Raw score:619.00) d1qyca_ 1 -------------------------------------------------------GSRSR 5 ::::: d1qlwa_ 1 vpktpagpltlsgqgsffvggrdvtsetlslspkydahgtvtvdqmyvryqipqrAKRYP 60 d1qyca_ 6 ILLIG-----ATGY-----igrHVAKASLDLGHPTFLLV-----REST------------ 38 ::::: :::: ::::::::::::::::: :::: d1qlwa_ 61 ITLIHgccltGMTWettpdgrmGWDEYFLRKGYSTYVIDqsgrgRSATdisainavklgk 120 d1qyca_ 39 -----------------------------------------assNSEKAqllesfkasga 57 ::::: d1qlwa_ 121 apasslpdlfaagheaawaifrfgprypdafkdtqfpvqaqaelWQQMV-------pdwl 173 d1qyca_ 58 nivhgsiDDHASLVEAVKN--VDVVISTVGslqiesQVNIIKAIK-EVGTVKRFFPS--- 111 :::::::::::: ::::::::: ::::::::: ::::::::::: d1qlwa_ 174 gsmptpnPTVANLSKLAIKldGTVLLSHSQ-----sGIYPFQTAAmNPKGITAIVSVepg 228 d1qyca_ 112 ------------------EFGNdvdnVHAVePAKSVFEVKAKVRRAIEAegipytYVSSN 153 :::: :::: :::::::::::::::::: ::::: d1qlwa_ 229 ecpkpedvkpltsipvlvVFGD--hiEEFP-RWAPRLKACHAFIDALNAaggkgqLMSLP 285 d1qyca_ 154 cfagyflrslaqagltapprdkvvilgdgnarVVFV---------KEEDIGTFTIKAVDD 204 :::: ::::::::::::::: d1qlwa_ 286 ------------------------------alGVHGnshmmmqdrNNLQVADLILDWIGR 315 d1qyca_ 205 Prtlnktlylrlpantlslnelvalwekkidktlekayvpeeevlkliadtpfpanisia 264 : d1qlwa_ 316 N----------------------------------------------------------- 316 d1qyca_ 265 ishsifvkgdqtnfeigpagveasqlypdvkyttvdeylsnfv 307 d1qlwa_ 317 -----------------------------------------ta 318 FAST alignment (Normalized score: 3.88 Raw score:1211.00) d1qyca_ 1 -------------------------------------------------------GSRSR 5 ::::: d1qlwa_ 1 VPKTPAGPLTLSGQGSFFVGGRDVTSETLSLSPKYDAHGTVTVDQMYVRYQIPQRAKRYP 60 d1qyca_ 6 ILLIGATGYIGR-------------------HVAKASLDLGHPTFLLVRESTASS----- 41 ::: :::::::::::::::::: d1qlwa_ 61 ITL---------IHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQ------SGRGR 105 d1qyca_ 42 -------------------------------------------------------NSEKA 46 ::::: d1qlwa_ 106 SATDISAINAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELW 165 d1qyca_ 47 QLLESFKASGANIVHGSID---------------DHASLVEAVKNV---DVVISTVGSLQ 88 : ::::::::::: ::::: :::: d1qlwa_ 166 Q------------------QMVPDWLGSMPTPNPTVANLSKLAIK-LDGTVLLS--HSQS 204 d1qyca_ 89 IESQVNIIKAIKEV-GTVKRFFPSEFGNDVDNVHA------------------------- 122 ::::::::::: :::::::: d1qlwa_ 205 ---GIYPFQTAAMNPKGITAIVS------------VEPGECPKPEDVKPLTSIPVLVVFG 249 d1qyca_ 123 -----VEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKVV 177 ::::::::::::::::::::::::::::: d1qlwa_ 250 DHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMS-------------------------- 283 d1qyca_ 178 ILGDGNARVVFV-----------------KEEDIGTFTIKAVDDPRTLNKTLYLRLPANT 220 ::::::::::::: d1qlwa_ 284 ------------LPALGVHGNSHMMMQDRNNLQVADLILDWI------------------ 313 d1qyca_ 221 LSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEI 280 d1qlwa_ 314 ------------------------------------------------------------ 314 d1qyca_ 281 GPAGVEASQLYPDVKYTTVDEYLSNFV----- 307 d1qlwa_ 314 ---------------------------GRNTA 318 TMalign alignment (TM-score: 0.32 Raw score:98.02) d1qyca_ 1 ----------------------------------------------------G-SRS-RI 6 : ::: :: d1qlwa_ 1 VPKTPAGPLTLSGQGSFFVGGRDVTSETLSLSPKYDAHGTVTVDQMYVRYQIPQRAKRYP 60 d1qyca_ 7 LLIGA----TGYIGR-------HVAKASLDLGHPTFLLV----RES-------------- 37 ::::: :::::: ::::::::::::::::: ::: d1qlwa_ 61 ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLGK 120 d1qyca_ 38 -----------------------------------------TASSNSEK-AQL---LESF 52 ::: :: d1qlwa_ 121 APASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQ-----AELW-QQMVP---- 170 d1qyca_ 53 KASGANIVHGSIDDHASLVEAVKNVDVVISTVGSL--Q---IESQVNIIKAIKEVGTVKR 107 ::: : :::::::::::: : :::: d1qlwa_ 171 --------------------------------DWLGSMPTPNPTVANLSKLAI-K-LDGT 196 d1qyca_ 108 FFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCF-----------A 156 :::: ::::: : :::::::::: :::::::::::: d1qlwa_ 197 VLLS-HSQSG------------I-YPFQTAAMNP--KGITAIVSVEPGECPKPEDVKPL- 239 d1qyca_ 157 GYFLRSLAQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRL 216 ::::::::: d1qlwa_ 240 --------------------------------------------------TSIPVLVVF- 248 d1qyca_ 217 PANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQT 276 ::::: : :: :::::: :::: d1qlwa_ 249 --GDHIE---E----------------------------------FP-RWAPRL--KACH 266 d1qyca_ 277 NF-E-IG--PAGVEASQLYP-DVKYTTVDEY------LSN------------------FV 307 :: : :: :::::::: : :::::::: : d1qlwa_ 267 AFIDALNAAGGKGQLMS--LP--ALGVHGNSHMMMQD--RNNLQVADLILDWIGRNTA-- 318 HHsearch alignment (Probability: 0.21 E-value:0.01) d1qyca_ 6 ILLIGATGYIGRH----------VAKASLDLGHPTFLLVRESTASSN 42 :::::: :::::: :::::::::::::::::::::::: d1qlwa_ 62 TLIHGC-CLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSA 107