Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1ri5a_ | mRNA cap (Guanine N-7) methyltransferase | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 0.897 --> HitDALI alignment (Z-score: 5.9 Raw score:517.40) d1l7da1 1 ------------AGYRAVIDGAyefarAFPmmmtaagtvppARVLVFGVGvagLQAIATA 48 :::::::::: ::: ::::::::: ::::::: d1ri5a_ 1 sktinirnannfIKACLIRLYT-----KRG-----------DSVLDLGCG--kGGDLLKY 42 d1l7da1 49 KRLGA-VVMATDVRAATKEQVESLG--------GKFIT---vkKQAEavLKELvkTDIAI 96 ::::: ::::::::::::::::::: ::::: :::: :::: ::::: d1ri5a_ 43 ERAGIgEYYGVDIAEVSINDARVRArnmkrrfkVFFRAqdsygRHMD--LGKE--FDVIS 98 d1l7da1 97 TTAL---ipgkpapvliTEEMVTK-MKPGSVIIDlAVEA--------------------- 131 :::: ::::::: ::::::::: :::: d1ri5a_ 99 SQFSfhyafstsesldiAQRNIARhLRPGGYFIM-TVPSrdvilerykqgrmsndfykie 157 d1l7da1 132 ---------------------------ggncplsepgkiVVKHGVkivGHTNVPSR---- 160 :::::: :::::::: d1ri5a_ 158 lekmedvpmesvreyrftlldsvnncieyfvdftrmvdgFKRLGLslvERKGFIDFyede 217 d1l7da1 161 ----------------------------------- 161 d1ri5a_ 218 grrnpelskkmglgcltreesevvgiyevvvfrkl 252 FAST alignment (Normalized score: 4.46 Raw score:894.50) d1l7da1 1 ---------AGYRAVIDGAYEFARAFPMMMTAAGTVP--PARVLVFGVGVAG-LQAIATA 48 ::::::::::::: :::::::::: ::::::: d1ri5a_ 1 SKTINIRNANNFIKACLIRLYT---------------KRGDSVLDLGCG---KGGDLLKY 42 d1l7da1 49 KRLG-AVVMATDVRAATKEQVESL---------GGKFITVKKQAEAVLKEL--------- 89 :::: :::::::::::::::::: :::::: d1ri5a_ 43 ERAGIGEYYGVDIAEVSINDARV-RARNMKRRFKVFFRA------------QDSYGRHMD 89 d1l7da1 90 --VKTDIAITTALIPGKPAPVLI----------------TEEMVT-KMKPGSVIIDLAVE 130 :::::::: :::::: :::::::::: d1ri5a_ 90 LGKEFDVISS-------------QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM---- 132 d1l7da1 131 AGGNCPLSEPGKIVVK-------------------------------------------- 146 d1ri5a_ 133 ----------------TVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTL 176 d1l7da1 147 -----------------------HGVK-IVGHT---NVPSR------------------- 160 :::: :::: :::: d1ri5a_ 177 LDSVNNCIEYFVDFTRMVDGFKRLGLSLVERK-GFIDFYE-DEGRRNPELSKKMGLGCLT 234 d1l7da1 161 ------------------ 161 d1ri5a_ 235 REESEVVGIYEVVVFRKL 252 TMalign alignment (TM-score: 0.59 Raw score:95.12) d1l7da1 1 ------------AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATA 48 :::::::::: :: ::::::::::: ::: :::: d1ri5a_ 1 SKTINIRNANNFIKACLIRLYT------KR----------GDSVLDLGCGK-GGD-LLKY 42 d1l7da1 49 KRLGA-VVMATD-V--R-AATKEQVESL-G--GKFITVKKQA--EAVLKELVKTDIAITT 98 ::::: :::::: : : :::::::::: : :::::: ::: :::::: ::::::::: d1ri5a_ 43 ERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRA-QDSYGRHMDLG-KEFDVISSQ 100 d1l7da1 99 ALIPGKPAPV------L-ITEEMVTK-MKPGSVIIDLAVE-------------------- 130 :: :::: : :::::::: ::::::::::::: d1ri5a_ 101 FS----FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKI 156 d1l7da1 131 ------------------------------AGG--NCPLSE-PGKIVVKHGVKI-VGHTN 156 ::: :::: :::::::: ::::: d1ri5a_ 157 ELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFT--RMVDG----FKRLGLSLVERKGF 210 d1l7da1 157 --VPS-R----------------------------------- 160 ::: : d1ri5a_ 211 IDFYEDEGRRNPELSKKMGLGCLTREESEVVGIYEVVVFRKL 252 HHsearch alignment (Probability: 0.96 E-value:0.00) d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK----FITVKKQAE 83 :::::::::::: :::::::::::::::::::::::::::::::::: ::::::::: d1ri5a_ 24 RGDSVLDLGCGK-GGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 82 d1l7da1 84 AVLKEL---VKTDIAITTALI----PGKPAPVLITEEMVTKMKPGSVIIDLAVE 130 :::::: :::::::::::: ::::::::::::::::::::::::::::: d1ri5a_ 83 SYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136