Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1uuya_ | Plant CNX1 G domain | Molybdenum cofactor biosynthesis proteins | Molybdenum cofactor biosynthesis proteins | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 1.038 --> HitDALI alignment (Z-score: 3.3 Raw score:329.90) d1l7da1 1 agyravidgayefarafpmmmtaagtvpPARVLVFG----------vGVAGLQAIATAKR 50 :::::::: ::::::::::::: d1uuya_ 1 --------------------------gpEYKVAILTvsdtvsagagpDRSGPRAVSVVDS 34 d1l7da1 51 L-----GAVV-MATDVRaatkeqveslggkfitvkkqAEAVLKELV--KTDIAITTAL-I 101 : :::: :::::: ::::::::: :::::::::: : d1uuya_ 35 SseklgGAKVvATAVVP--------------deveriKDILQKWSDvdEMDLILTLGGtG 80 d1l7da1 102 PGKPAPVL-iTEEMVT----------------------------kMKPGSVIIDLAveag 132 :::::::: :::::: ::::::::::: d1uuya_ 81 FTPRDVTPeaTKKVIEretpgllfvmmqeslkitpfamlarsaagIRGSTLIINMP---- 136 d1l7da1 133 gncplsepgkivvkhgvkivghtnvpsr 160 d1uuya_ 137 ---gnpnavaecmeallpalkhalkqik 161 FAST alignment (Normalized score: 3.31 Raw score:530.60) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVP--PARVLVFGV-------------GVAGLQAI 45 :::::: :::::::: d1uuya_ 1 ----------------------------GPEYKVAI---LTVSDTVSAGAGPDRSGPRAV 29 d1l7da1 46 ATAKR-----LGAV-VMATDVRAATKEQVESLGGKFITVK-------KQAEAVLKEL--V 90 ::::: :::: :::: :::::::::: : d1uuya_ 30 SVVDSSSEKLGGAKVVATA---------------------VVPDEVERIKDILQKWSDVD 68 d1l7da1 91 KTDIAITT-ALIPGKPAPVLI-----TEEMVTKM-------------------------- 118 :::::::: :::::::: ::::: d1uuya_ 69 EMDLILTLGGTGFTPRD----VTPEATKKVI---ERETPGLLFVMMQESLKITPFAMLAR 121 d1l7da1 119 -----KPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSR------------- 160 :::::::: d1uuya_ 122 SAAGIRGSTLIIN----------------------------------MPGNPNAVAECME 147 d1l7da1 161 -------------- 161 d1uuya_ 148 ALLPALKHALKQIK 161 TMalign alignment (TM-score: 0.41 Raw score:64.99) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV----------GVAGLQAIATAKR 50 : :::::::::: ::::::::::::: d1uuya_ 1 ------------------G--------PEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDS 34 d1l7da1 51 -L-----GAVVMATDVR---AATKEQVESLGGKFITVKKQAEAVLKELV--KTDIAITTA 99 : :::::::::: :::::::::::: ::::::::: d1uuya_ 35 SSEKLGGAKVVATAVVPDEV-----------------ERIKDILQKWSDVDEMDLILTLG 77 d1l7da1 100 LIPGKP-APVL-ITEEMVTKMKP--GSVI--ID--L-----AVEAGGNCPLSEPGKIVVK 146 :::::: :::: ::::::::: : :: :: : :::::::: : :: d1uuya_ 78 GTGFTPRDVTPEATKKVIERE-TPG--LLFVMMQESLKITPFAMLARSA-A-------GI 126 d1l7da1 147 HG--VKIVGH----TN--VP-SR------------- 160 :: :::::: : :: :: d1uuya_ 127 RGSTLIINMPGNPN-AVAECMEALLPALKHALKQIK 161 HHsearch alignment (Probability: 0.48 E-value:0.00) d1l7da1 51 LGAVVMATDVRAATKEQVESLGGKFITVKKQAEAVLKEL--VKTDIAITTALIPGKPAPV 108 ::::::::::::::::::: ::::::: :::::::::::: ::::: d1uuya_ 40 GGAKVVATAVVPDEVERIK-------------DILQKWSDVDEMDLILTLGGT--GFTPR 84 d1l7da1 109 LITEEMVTKMKPGS------VIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPS 159 :::::::::::::: ::::::::::::::::: ::::::::::::::::::: d1uuya_ 85 DVTPEATKKVIERETPGLLFVMMQESLKITPFAMLAR-SAAGIRGSTLIINMPGNPN 140