Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1p1ca_ | Guanidinoacetate methyltransferase | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 1.243 --> HitDALI alignment (Z-score: 8.4 Raw score:616.40) d1l7da1 1 -----AGYRAVIDGAYefarafpmmmtaagtvppARVLVFGVGVagLQAIATAKRLGA-V 54 ::::::::::: :::::::::: :::::::::::: : d1p1ca_ 1 rwetpYMHSLAAAAAS----------------rgGRVLEVGFGM--AIAASRVQQAPIkE 42 d1l7da1 55 VMATDVRAATKEQVESLG------GKFITvkkqAEAVLKE-lVKTDIAITTALIPG---K 104 :::::::::::::::::: ::::: ::::::: :::::::::::::: : d1p1ca_ 43 HWIIECNDGVFQRLQNWAlkqphkVVPLK-glwEEVAPTLpdGHFDGILYDTYPLSeetW 101 d1l7da1 105 PAPV-lITEEM-VTKMKPGSVIIDLAVEAG------------------gncPLSE---pg 141 :::: ::::: :::::::::::::::::: :::: d1p1ca_ 102 HTHQfnFIKTHaFRLLKPGGILTYCNLTSWgelmkskytditamfeetqvpALLEagfqr 161 d1l7da1 142 KIVV---------khgvkivghTNVP----sr 160 :::: :::: d1p1ca_ 162 ENICtevmalvppadcryyafpQMITplvtkh 193 FAST alignment (Normalized score: 6.04 Raw score:1061.00) d1l7da1 1 A------GYRAVIDGAYEFARAFPMMMTAAGTVPP--ARVLVFGVGVAG-LQAIATAKRL 51 :::::::::: ::::::::: :::::::::: d1p1ca_ 1 -RWETPYMHSLAAAAAS------------------RGGRVLEVGFG---MAIAASRVQQA 38 d1l7da1 52 G-AVVMATDVRAATKEQVES------LGGKFITVK----KQAEAVLKEL---VKTDIAIT 97 : :::::::::::::::::: ::::::: ::::: :::::::: d1p1ca_ 39 PIKEHWIIECNDGVFQRLQNWALKQPHKVVPLK--GLWEEVAPT-----LPDGHFDGILY 91 d1l7da1 98 TALIPGKPAPVLI-------------TEEMVT-KMKPGSVIIDLAVEAGGNC-------- 135 :::: :::::: :::::::::: d1p1ca_ 92 DTYP---------LSEETWHTHQFNFIKTHAFRLLKPGGILTY---------CNLTSWGE 133 d1l7da1 136 -----------------------PLSEPGKIVVKHGV--KIVGHTNVPSR---------- 160 :::: ::::: d1p1ca_ 134 LMKSKYTDITAMFEETQVPALLEAGFQ----------RENICTE------VMALVPPADC 177 d1l7da1 161 ---------------- 161 d1p1ca_ 178 RYYAFPQMITPLVTKH 193 TMalign alignment (TM-score: 0.62 Raw score:98.49) d1l7da1 1 -----AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGA-V 54 :::::::::: : : : :::::::::: :::::::::::: : d1p1ca_ 1 RWETPYMHSLAAAAA--S-R-G------------GRVLEVGFGM--AIAASRVQQAPIKE 42 d1l7da1 55 VMATDVRAATKEQVESLG------GKFITV--KKQAEAVLKELVKTDIAITTALIP-G-- 103 :::::::::::::::::: :::::: :::::: :: :::::::::::::: : d1p1ca_ 43 HWIIECNDGVFQRLQNWALKQPHKVVPLKGLWEEVAPT-LP-DGHFDGILYDTYPLSEET 100 d1l7da1 104 KPAPV-LITEEM-VTKMKPGSVIIDLAV-EA-----------------GG-NCPLS-EPG 141 ::::: :::::: ::::::::::::::: :: :: :::: d1p1ca_ 101 WHTHQFNFIKTHAFRLLKPGGILTYCNLTSWGELMKSKYTDITAMFEETQV-PALLE--- 156 d1l7da1 142 KIVVKH-GVKIVGHTNVP------------SR-------- 160 :::: :::::::::: :: d1p1ca_ 157 --AGFQR-ENICTEVMALVPPADCRYYAFPQMITPLVTKH 193 HHsearch alignment (Probability: 0.97 E-value:0.00) d1l7da1 24 AGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLG----GKFITVK 79 ::::::::::::::: ::::::::::::::::::::::::::::::::: ::::::: d1p1ca_ 13 AAASRGGRVLEVGFG-MAIAASRVQQAPIKEHWIIECNDGVFQRLQNWALKQPHKVVPLK 71 d1l7da1 80 KQAEAVLKEL--VKTDIAIT-TALIPG----KPAPVLITEEMVTKMKPGSVIIDLA 128 :::::::::: :::::::: :::::: ::::::::::::::::::::::::: d1p1ca_ 72 GLWEEVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKTHAFRLLKPGGILTYCN 127