Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1nvmb1 | Acetaldehyde dehydrogenase (acylating) | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 1.452 --> HitDALI alignment (Z-score: 8.9 Raw score:656.10) d1l7da1 1 agyravidgayefarafpmmmtaagTVPPARVLVFGVGVAGLQAIATAKRLG---AVVMA 57 ::::::::::::::::::::::::::: ::::: d1nvmb1 1 -------------------------MNQKLKVAIIGSGNIGTDLMIKVLRNAkylEMGAM 35 d1l7da1 58 TDVRAAT--KEQVESLGGKFITvkkqaEAVLKE--LVKTDIAITTALipgkpAPVL--IT 111 ::::::: ::::::::::::: :::::: :::::::::::: :::: :: d1nvmb1 36 VGIDAASdgLARAQRMGVTTTY--agvEGLIKLpeFADIDFVFDATS-----ASAHvqNE 88 d1l7da1 112 EEMVTKMkPGSVIIDLAvEAGGncplSEPG-------kIVVKhgvKIVGHTN-------- 156 ::::::: ::::::::: :::: :::: :::: ::::::: d1nvmb1 89 ALLRQAK-PGIRLIDLT-PAAI----GPYCvpvvnleeHLGK---LNVNMVTyagnldim 139 d1l7da1 157 --------------vpsr 160 d1nvmb1 140 tsaalataermaqsmlna 157 FAST alignment (Normalized score: 7.19 Raw score:1140.00) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKR--LGAV-VMA 57 ::::::::::::::::::::::::: :::: ::: d1nvmb1 1 -------------------------MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAM 35 d1l7da1 58 TDVR--AATKEQVESLGGKFITVKK--QAEAVL--KELVKTDIAITTALIPGKPAPVLI- 110 :::: ::::::::::::::: :::::: :::::::::::: d1nvmb1 36 VGIDAASDGLARAQRMGVTTT----YAGVEGLIKLPEFADIDFVFDA------------T 79 d1l7da1 111 --------TEEMVTKMKPGSVIIDLAVEAGGNC---PLSEPGKIVVKHGV---------- 149 :::::: :::::::::: :::: d1nvmb1 80 SASAHVQNEALLRQ-AKPGIRLIDL--------TPAAIGP----------YCVPVVNLEE 120 d1l7da1 150 ----KIVGHTNVPSR--------------------------- 160 :::::: d1nvmb1 121 HLGKLNVNMV-----TYAGNLDIMTSAALATAERMAQSMLNA 157 TMalign alignment (TM-score: 0.59 Raw score:93.62) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKR-L--GAVVMA 57 : : : :::::::::::::::::::::: : :::::: d1nvmb1 1 -----------------M-N------Q-KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAM 35 d1l7da1 58 TDVRAAT--KEQVESLGGKFITVKKQAEAVLKE--LVKTDIAITTALIPGKPAPV-LITE 112 ::::::: :::::::::::::: ::: ::::: :::::::::::: :::: :::: d1nvmb1 36 VGIDAASDGLARAQRMGVTTTYA-GVE-GLIKLPEFADIDFVFDATS----ASAHVQNEA 89 d1l7da1 113 EMVTKMKPGSVIIDLAVEAGGNCPLSEPGK--------IVVKHGVKIVGHTN-----VPS 159 :::::::: ::::::: : :: ::::: ::: :::::::: ::: d1nvmb1 90 LLRQAKPG-IRLIDLT-P-AA----IGPYCVPVVNLEEHLG---KLNVNMVTYAGNLDIM 139 d1l7da1 160 --R--------------- 160 : d1nvmb1 140 TSAALATAERMAQSMLNA 157 HHsearch alignment (Probability: 0.95 E-value:0.00) d1l7da1 28 PPARVLVFGVGVAGLQA-IATAKR-LGAV-VMATDVRAAT--KEQVESLGGKFITVKKQA 82 ::::::::::::::::: :::::: :::: :::::::::: :::::::::::: :::: d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT--YAGV 60 d1l7da1 83 EAVLKE--LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGG--NCPLS 138 :::::: :::::::::: ::::: :::::::::::::::::::::::::: ::::: d1nvmb1 61 EGLIKLPEFADIDFVFDA--TSASA--HVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVV 116 d1l7da1 139 E 139 : d1nvmb1 117 N 117