Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1o97d1 | Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 1.485 --> HitDALI alignment (Z-score: 4.3 Raw score:412.10) d1l7da1 1 agyravidgayefarafpmmmtaagtvppARVLVFGV------GVAGLQAIATAKRLG-- 52 :::::::: ::::::::::::::: d1o97d1 1 -----------------------------SKILVIAEhrrndlRPVSLELIGAANGLKks 31 d1l7da1 53 --AVVMATDV---RAATKEQVESLGG-KFITV---------kKQAEAVLKELV--KTDIA 95 :::::::: ::::::::::::: ::::: ::::::::::: ::::: d1o97d1 32 geDKVVVAVIgsqADAFVPALSVNGVdELVVVkgssidfdpdVFEASVSALIAahNPSVV 91 d1l7da1 96 ITTALIpgkpAPVL--ITEE--------------------------------mvtkmkPG 121 :::::: :::: :::: :: d1o97d1 92 LLPHSV--dsLGYAssLASKtgygfatdvyiveyqgdelvatrggynqkvnvevdfpgKS 149 d1l7da1 122 SVIIDLA----veaggncplsepgkivvkhgvkivghtnvpsr 160 ::::::: d1o97d1 150 TVVLTIRpsvfkplegagspvvsnvdapsvqsrsqnkdyvevg 192 FAST alignment (Normalized score: 3.82 Raw score:670.20) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFG--------VGVAGLQAIATAKR-- 50 ::::: :::::::::::::: d1o97d1 1 -----------------------------SKILV--IAEHRRNDLRPVSLELIGAANGLK 29 d1l7da1 51 --LGAVVMATDV-----RAATKEQVESLG-GKFITVK-----------KQAEAVLKELV- 90 :::::::: :::::::::::: ::::: ::::::::::: d1o97d1 30 KSGEDKVVVA--VIGSQADAFVPALSVNGVDELVV--VKGSSIDFDPDVFEASVSALIAA 85 d1l7da1 91 -KTDIAITTALIPGKPAPVLI---------TEEMVTKMK--------------------- 119 ::::::: ::::::: d1o97d1 86 HNPSVVLL-------------PHSVDSLGYASSLASK--TGYGFATDVYIVEYQGDELVA 130 d1l7da1 120 -----------------PGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSR-- 160 ::::::: d1o97d1 131 TRGGYNQKVNVEVDFPGKSTVVLT----------------------------------IR 156 d1l7da1 161 ------------------------------------ 161 d1o97d1 157 PSVFKPLEGAGSPVVSNVDAPSVQSRSQNKDYVEVG 192 TMalign alignment (TM-score: 0.46 Raw score:74.00) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFG-----VGVAGLQAIATAKR-L--- 51 :::::::: :::::::::::::: : d1o97d1 1 ----------------------------SKILVIAEHRRNDLRPVSLELIGAANGLKKSG 32 d1l7da1 52 -GAVVMATDV-RA-ATKEQVES--LGGKFITV-K------KQA-EAVLKELV--KTDIAI 96 ::::::::: :: :::::::: :::::::: : ::: :::::::: :::::: d1o97d1 33 EDKVVVAVIGSQADAFVPALSVNGVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSVVL 92 d1l7da1 97 TTALIPGKPAP-VLITEEMVTKMKPGSVIIDLA-----------VEAGGNCPLSEP---- 140 :::: :: ::::::::::::: ::::::: ::: d1o97d1 93 LPHS-----VDSLGYASSLASKTGY-GFATDVYIVEYQGDELVA---------TRGGYNQ 137 d1l7da1 141 --GKIVVKH-G--VKIVGHTNVPS-------------------------------R 160 ::::::: : ::::::::::: d1o97d1 138 KVNVEVDFPGKSTVVLTIRPSVFKPLEGAGSPVVSNVDAPSVQSRSQNKDYVEVG- 192 HHsearch alignment (Probability: 0.06 E-value:0.10) d1l7da1 83 EAVLKELVK--TDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID 126 ::::::::: :::::::::::::: : ::::::::::::::: d1o97d1 77 ASVSALIAAHNPSVVLLPHSVDSLG----Y-ASSLASKTGYGFATD 117