Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1u2za_ | Catalytic, N-terminal domain of histone methyltransferase Dot1l | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 1.567 --> HitDALI alignment (Z-score: 5.4 Raw score:628.60) d1l7da1 1 ------------------------------------------------------------ 1 d1u2za_ 1 sstfvdwngpclrlqyplfdieylrsheiysgtpiqsislrttaklqsilfsnymeeykv 60 d1l7da1 1 ------------------------------------------------------------ 1 d1u2za_ 61 dfkrstaiynpmseigklieysclvflpspyaeqlketilpdlnasfdnsdtkgfvnain 120 d1l7da1 1 ------------------------------------------------------------ 1 d1u2za_ 121 lynkmireiprqriidhletidkiprsfihdflhivytrsihpqanklkhykafsnyvyg 180 d1l7da1 1 AGYR-aVIDGAYEFaRAFPmmmtaagtvpPARVLVFGVGvagLQAIATAK-RLGA-VVMA 57 :::: :::::::: :::: :::::::::: :::::::: :::: :::: d1u2za_ 181 ELLPnfLSDVYQQC-QLKK----------GDTFMDLGSG--vGNCVVQAAlECGCaLSFG 227 d1l7da1 58 TDVRAATKEQVES----------------lGGKFIT--vkkQAEAVLKELVKTDIAITTA 99 ::::::::::::: :::::: ::::::::::::::::::: d1u2za_ 228 CEIMDDASDLTILqyeelkkrcklygmrlnNVEFSLkksfvDNNRVAELIPQCDVILVNN 287 d1l7da1 100 LIpgKPAPVliTEEMVTKMKPGSVIIDLaveagGNCP--------lsepgkiVVKHgvki 151 :: ::::: ::::::::::::::::: :::: :::: d1u2za_ 288 FL-fDEDLNkkVEKILQTAKVGCKIISL-----KSLRsltyqinfynvenifNRLK---v 338 d1l7da1 152 vGHTNVPSR-------------------------------- 160 :::::::: d1u2za_ 339 qRYDLKEDSvswthsggeyyistvmedvdeslfsparvkyt 379 FAST alignment (Normalized score: 4.77 Raw score:1174.00) d1l7da1 1 ------------------------------------------------------------ 1 d1u2za_ 1 SSTFVDWNGPCLRLQYPLFDIEYLRSHEIYSGTPIQSISLRTTAKLQSILFSNYMEEYKV 60 d1l7da1 1 ------------------------------------------------------------ 1 d1u2za_ 61 DFKRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAIN 120 d1l7da1 1 ------------------------------------------------------------ 1 d1u2za_ 121 LYNKMIREIPRQRIIDHLETIDKIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYG 180 d1l7da1 1 -AGYRAVIDGAYEFARAFPMMMTAAGTVP-----PARVLVFGVGVAG-LQAIATAK-RLG 52 :::::::::::: :::::::::: :::::::: ::: d1u2za_ 181 ELLPNFLSDVYQQ----------------CQLKKGDTFMDLGSG---VGNCVVQAALECG 221 d1l7da1 53 A-VVMATDVRAATKEQVESL-----------------GGKFITVKKQ-------AEAVLK 87 : ::::::::::::::::: ::::: :::::: d1u2za_ 222 CALSFGCEIMDDASDLTIL-QYEELKKRCKLYGMRLNNVEFS-----LKKSFVDNNRVAE 275 d1l7da1 88 ELVKTDIAITTALIPGKPAPVLI----------TEEMVTKMKPGSVIIDLAVEAGGNCPL 137 :::::::::::: ::::::::::::::::: d1u2za_ 276 LIPQCDVILVNN-----------FLFDEDLNKKVEKILQTAKVGCKIISL---------- 314 d1l7da1 138 SEPGKIVVK-------------------HGVKIVGHTNVPSR------------------ 160 :::::::: d1u2za_ 315 ---------KSLRSLTYQINFYNVENIFNRLKVQRY------DLKEDSVSWTHSGGEYYI 359 d1l7da1 161 -------------------- 161 d1u2za_ 360 STVMEDVDESLFSPARVKYT 379 TMalign alignment (TM-score: 0.61 Raw score:98.05) d1l7da1 1 ------------------------------------------------------------ 1 d1u2za_ 1 SSTFVDWNGPCLRLQYPLFDIEYLRSHEIYSGTPIQSISLRTTAKLQSILFSNYMEEYKV 60 d1l7da1 1 ------------------------------------------------------------ 1 d1u2za_ 61 DFKRSTAIYNPMSEIGKLIEYSCLVFLPSPYAEQLKETILPDLNASFDNSDTKGFVNAIN 120 d1l7da1 1 ------------------------------------------------------------ 1 d1u2za_ 121 LYNKMIREIPRQRIIDHLETIDKIPRSFIHDFLHIVYTRSIHPQANKLKHYKAFSNYVYG 180 d1l7da1 1 -AGY-RAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKR-LGA-VVM 56 ::: :::::::::: ::: ::::::::::: ::::::::: ::: ::: d1u2za_ 181 ELLPNFLSDVYQQCQ--LKK----------GDTFMDLGSGV--GNCVVQAALECGCALSF 226 d1l7da1 57 ATDVRAA-TKEQV-ES--L------------GGKFIT-VK-KQAEAVLKELVKTDIAITT 98 ::::::: ::::: :: : :::::: :: ::::::::::::::::::: d1u2za_ 227 GCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVN 286 d1l7da1 99 ALIPGKPA-PV-LITEEMVTKMKPGSVIIDLAVEAGGNCPLSE-----------PGKIVV 145 ::: ::: :: ::: ::::::::::::::: : : :::: : d1u2za_ 287 NFL--FDEDLNKKVE-KILQTAKVGCKIISL-K---S--LRSLTYQINFYNVEN-----I 332 d1l7da1 146 KHGVKIVGHTNV--P-----S--R----------------------- 160 :::::::::::: : : : d1u2za_ 333 FNRLKVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPARVKYT 379 HHsearch alignment (Probability: 0.96 E-value:0.00) d1l7da1 26 TVPPARVLV-FGVGVAGLQAIATAKRLGAV-VMATDVRAATKEQVESLGGK--------- 74 ::::::::: :::: ::::::::::::::: :::::::::::::::::::: d1u2za_ 195 QLKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG 253 d1l7da1 75 --F----I---TVKKQAEAVLKELVKTDIAITTALIPGKPAPVLI--TEEMVTKMKPGSV 123 : : ::::::::::::::::::::::::::: :::: ::::::::::::: d1u2za_ 254 MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCK 310 d1l7da1 124 IIDL 127 :::: d1u2za_ 311 IISL 314