Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1e7wa_ | Dihydropteridin reductase (pteridine reductase) | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 1.706 --> HitDALI alignment (Z-score: 7.9 Raw score:732.80) d1l7da1 1 agyravidgayefarafpmmmtaagtvPPARVLVFGV-GVAGLQAIATAKRLGAVVMATD 59 :::::::::: :::::::::::::::::::::: d1e7wa_ 1 ---------------------------TVPVALVTGAaKRLGRSIAEGLHAEGYAVCLHY 33 d1l7da1 60 V-RAAT-KEQVESLG------GKFIT-----------------vkKQAEAVLKELV---- 90 : :::: :::::::: ::::: ::::::::::: d1e7wa_ 34 HrSAAEaNALSATLNarrpnsAITVQadlsnvatapvssapvtlfTRCAELVAACYthwg 93 d1l7da1 91 KTDIAITTALIPG---------------KPAP---VLIT--EEMVTKM--------KPGS 122 ::::::::::::: :::: :::: ::::::: :::: d1e7wa_ 94 RCDVLVNNASSFYptpllreametatadLFGSnaiAPYFliKAFAHRVagtpakhrGTNY 153 d1l7da1 123 VIIDLA----------------vEAGGncPLSEpgkIVVK--HGVKIVGHTN-------- 156 :::::: :::: :::: :::: :::::::::: d1e7wa_ 154 SIINMVdamtnqpllgytiytmaKGAL-eGLTR-saALELapLQIRVNGVGPglsvlvdd 211 d1l7da1 157 ---------------------------------------------VPSR------- 160 :::: d1e7wa_ 212 mppavweghrskvplyqrdssaaevsdvviflcsskakyitgtcvKVDGgysltra 267 FAST alignment (Normalized score: 4.83 Raw score:997.30) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVF-GVGVAGLQAIATAKRLGAVVMATD 59 :::::::: :::::::::::::::::::::::: d1e7wa_ 1 ---------------------------TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHY 33 d1l7da1 60 V------RAATKEQVESL----GGKFITV----------------KKQAEAVLKELV--- 90 :::::::::: ::::: :::::::::::: d1e7wa_ 34 -HRSAAEANALSATLNA-RRPNSAITV--QADLSNVATAPVSSAPVTLFTRCAELVAACY 89 d1l7da1 91 ----KTDIAITTALIPGKPAPVLI--------------------------------TEEM 114 ::::::::::: :::: d1e7wa_ 90 THWGRCDVLVNNASS---------FYPTPLLREAMETATADLFGSNAIAPYFLIKAFAHR 140 d1l7da1 115 VTKM-------KPGSVIIDLAVEAGGNCPLSEPGKIV----------------------- 144 :: :::::::: d1e7wa_ 141 VA--GTPAKHRGTNYSIIN------------------MVDAMTNQPLLGYTIYTMAKGAL 180 d1l7da1 145 -----------VKHGVKIVGHTNVPSR--------------------------------- 160 :::::::::: d1e7wa_ 181 EGLTRSAALELAPLQIRVNGV------GPGLSVLVDDMPPAVWEGHRSKVPLYQRDSSAA 234 d1l7da1 161 --------------------------------- 161 d1e7wa_ 235 EVSDVVIFLCSSKAKYITGTCVKVDGGYSLTRA 267 TMalign alignment (TM-score: 0.64 Raw score:101.87) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATD 59 :::::::::: :::::::::::::::::::::: d1e7wa_ 1 ---------------------------TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHY 33 d1l7da1 60 VR-AATKEQVESLG-------GKFITV--------K-----K----QAEAVLKELV---- 90 :: ::::::::::: :::::: : : :::::::::: d1e7wa_ 34 HRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSSAPVTLFTRCAELVAACYTHWG 93 d1l7da1 91 KTDIAITTALIPG---------------KP--APVLI-T-EEMVTKMK-------P--GS 122 ::::::::::::: :: ::::: : :::::::: : :: d1e7wa_ 94 RCDVLVNNASSFYPTPLLREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNY 153 d1l7da1 123 VIIDLAV--E-------------A-GGNCPLSEPGKIVVKH--G-VKIVG---------- 153 ::::::: : : :: ::::: :::::: : ::::: d1e7wa_ 154 SIINMVDAMTNQPLLGYTIYTMAKGAL-EGLTR--SAALELAPLQIRVNGVGPGLSVLVD 210 d1l7da1 154 --------------------------------------------HTNVPSR------ 160 ::::::: d1e7wa_ 211 DMPPAVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGYSLTRA 267 HHsearch alignment (Probability: 0.81 E-value:0.00) d1l7da1 33 LVF-GVGVAGLQAIATAKRLGAVVMATDVRAAT 64 ::: ::::::::::::::::::::::::::::: d1e7wa_ 6 LVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAA 38