Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1cyda_ | Carbonyl reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 1.709 --> HitDALI alignment (Z-score: 9.1 Raw score:784.10) d1l7da1 1 agyravidgayefaRAFPmmmtaagtvpPARVLVFGV-GVAGLQAIATAKRLGAVVMATD 59 :::: ::::::::: :::::::::::::::::::::: d1cyda_ 1 --------------LNFS----------GLRALVTGAgKGIGRDTVKALHASGAKVVAVT 36 d1l7da1 60 VRAATKEQVESLG--GKFIT-----vKKQAEAVLKElVKTDIAITTALIPG--------- 103 ::::::::::::: ::::: :::::::::: :::::::::::::: d1cyda_ 37 RTNSDLVSLAKECpgIEPVCvdlgdwDATEKALGGI-GPVDLLVNNAALVImqpflevtk 95 d1l7da1 104 -------kpAPVLIT--eEMVTKMK----PGSVIIDLA----------------vEAGGn 134 :::::: ::::::: ::::::::: :::: d1cyda_ 96 eafdrsfsvNLRSVFqvsQMVARDMinrgVPGSIVNVSsmvahvtfpnlitysstKGAM- 154 d1l7da1 135 cPLSEpgkiVVKH---GVKIVGHTN----------------------------------- 156 :::: :::: ::::::::: d1cyda_ 155 tMLTK--amAMELgphKIRVNSVNPtvvltdmgkkvsadpefarklkerhplrkfaeved 212 d1l7da1 157 ---------------------VPSR----- 160 :::: d1cyda_ 213 vvnsilfllsdrsastsgggiLVDAgylas 242 FAST alignment (Normalized score: 5.80 Raw score:1141.00) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVP----PARVLVF-GVGVAGLQAIATAKRLGAVV 55 ::::::: :::::::::::::::::::: d1cyda_ 1 ----------------------------LNFSGLRALVTGAGKGIGRDTVKALHASGAKV 32 d1l7da1 56 MATDVRAATKEQVES--LGGKFITVKK----QAEAVLKELV---KTDIAITTALIPGKPA 106 ::::::::::::::: ::::::: :::::::::: ::::::::::: d1cyda_ 33 VAVTRTNSDLVSLAKECPGIEPVC---VDLGDWDATEKALGGIGPVDLLVNNAAL----- 84 d1l7da1 107 PVLI------------------------TEEMVTKMK---------PGSVIIDLAVEAGG 133 ::::::: ::::::: d1cyda_ 85 ----VIMQPFLEVTKEAFDRSFSVNLRSVFQVSQM--VARDMINRGVPGSIVN------- 131 d1l7da1 134 NCPLSEPGKIVVK------------------------------------HGVKIVGHTNV 157 :::::::: d1cyda_ 132 -------------VSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSV--- 175 d1l7da1 158 PSR--------------------------------------------------------- 160 d1cyda_ 176 ---NPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGG 232 d1l7da1 161 ---------- 161 d1cyda_ 233 ILVDAGYLAS 242 TMalign alignment (TM-score: 0.66 Raw score:105.80) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATD 59 : ::: ::::::::: :::::::::::::::::::::: d1cyda_ 1 ---------L-----NFS----------GLRALVTGAGKGIGRDTVKALHASGAKVVAVT 36 d1l7da1 60 VRAATKEQVES-LG-GKFITV-----KKQAEAVLKELVKTDIAITTALIP-G-------- 103 ::::::::::: :: :::::: :::::::::: ::::::::::::: : d1cyda_ 37 RTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGI-GPVDLLVNNAALVIMQPFLEVTK 95 d1l7da1 104 -----KP--APVLIT--EEMVTKMK----PGSVIIDLAV--E-------------A-GGN 134 :: :::::: :::::::: :::::::::: : : :: d1cyda_ 96 EAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAM- 154 d1l7da1 135 CPLSEPGKIVVKH--G-VKIVGHTN----------------------------------V 157 ::::: :::::: : :::::::: : d1cyda_ 155 TMLTK--AMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVED 212 d1l7da1 158 P---------------------SR------ 160 : :: d1cyda_ 213 VVNSILFLLSDRSASTSGGGILVDAGYLAS 242 HHsearch alignment (Probability: 0.97 E-value:0.00) d1l7da1 27 VPPARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVKK---QA 82 :::::::::: :::::::::::::::::::::::::::::::::::::::::::: :: d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDW 62 d1l7da1 83 EAVLKELV---KTDIAITTALIPGK-------------------PAPVLITEEMVTKMKP 120 :::::::: :::::::::::::: :::::::::::::::: d1cyda_ 63 DATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMIN 122 d1l7da1 121 ---GSVIIDLAVEA 131 ::::::::::: d1cyda_ 123 RGVPGSIVNVSSMV 136