Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
---|---|---|---|---|---|
Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Hit | d1s6ya1 | 6-phospho-beta-glucosidase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 1.806 --> HitDALI alignment (Z-score: 7.1 Raw score:536.40) d1l7da1 1 agyravidgayefarafpmmmtaagtvpPARVLVFGV-GVAGLQAiATAKR-----LGAV 54 ::::::::: ::::::: ::::: :::: d1s6ya1 1 ----------------------------RLKIATIGGgSSYTPEL-VEGLIkryheLPVG 31 d1l7da1 55 -VMATDV--RAAT-KEQVESLG-----------GKFITvkkqaeAVLKELVKTDIAITTA 99 :::::: :::: :::::::: ::::: :::::::::::::::: d1s6ya1 32 eLWLVDIpeGKEKlEIVGALAKrmvekagvpieIHLTL------DRRRALDGADFVTTQF 85 d1l7da1 100 LI----------------------------PGKP--APVLIT--EEMVTKMKPGSVIIDL 127 :: :::: :::::: :::::::::::::::: d1s6ya1 86 RVgglearakderiplkygvigqetngpggLFKGlrTIPVILdiIRDMEELCPDAWLINF 145 d1l7da1 128 A--VEAGgncPLSEpgkiVVKHgvKIVGHTnvpsr 160 : :::: :::: :::: :::::: d1s6ya1 146 TnpAGMV-teAVLR---yTKQE--KVVGLC----- 169 FAST alignment (Normalized score: 5.11 Raw score:840.20) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFG-VGVAGLQAIATAKRLG------- 52 :::::::: :::::::::::::: d1s6ya1 1 ----------------------------RLKIATIGGGSSYTPELVEGLIK--RYHELPV 30 d1l7da1 53 AVVMATDV-------RAATKEQVES------LGGKFITVKKQAE--AVLKELVKTDIAIT 97 ::::::: :::::::::: ::::::: :::::::::::::: d1s6ya1 31 GELWLVD-IPEGKEKLEIVGALAKRMVEKAGVPIEIHL------TLDRRRALDGADFVTT 83 d1l7da1 98 TALIPGKPAPVLI---------------------------------------TEEMVTK- 117 ::: ::::::: d1s6ya1 84 QFR----------VGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDM 133 d1l7da1 118 --MKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGV-----------------KIVGHTNVP 158 ::::::::::: ::::: d1s6ya1 134 EELCPDAWLINFT---------------------NPAGMVTEAVLRYTKQEKVVGL---- 168 d1l7da1 159 SR- 160 d1s6ya1 169 --C 169 TMalign alignment (TM-score: 0.57 Raw score:90.41) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFG-VGVAGLQAIATAKR-L---GA-V 54 :::::::: :::::::::::::: : :: : d1s6ya1 1 ----------------------------RLKIATIGGGSSYTPELVEGLIKRYHELPVGE 32 d1l7da1 55 VMATDV--RAA-TKEQVESLG-----------GKFITVKKQAEAVLKELVKTDIAITTAL 100 :::::: ::: ::::::::: ::::: ::::::::::::::::: d1s6ya1 33 LWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTL------DRRRALDGADFVTTQFR 86 d1l7da1 101 I-----P--------------------G---KP-AP--VLIT-EEMVTKMKPGSVIIDLA 128 : : : :: :: :::: ::::::::::::::::: d1s6ya1 87 VGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 d1l7da1 129 VEA-GGNCPLSE-PGKIVVKHGVKIVGHTNVPSR 160 ::: :::::::: ::: :::::: : d1s6ya1 147 NPAGMVTEAVLRY----TKQ--EKVVGL--C--- 169 HHsearch alignment (Probability: 0.97 E-value:0.00) d1l7da1 30 ARVLVFGVGVAGLQA--IATAKRL----GAVVMATDVRAAT--KEQVES----LGG--KF 75 ::::::::::::::: ::::::: ::::::::::::: :::::: ::: :: d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61 d1l7da1 76 ITVKKQAEAVLKELVKTDIAITTALIPG 103 :::::::::::::::::::::::::::: d1s6ya1 62 PIEIHLTLDRRRALDGADFVTTQFRVGG 89