Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1fjha_ | 3-alpha-hydroxysteroid dehydrogenase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 1.830 --> HitDALI alignment (Z-score: 6.4 Raw score:583.60) d1l7da1 1 agyravidgayefarafpmmmtaagtvpPARVLVFGV-GVAGLQAIATAKRLGAVVMATD 59 ::::::::: :::::::::::::::::::::: d1fjha_ 1 ----------------------------MSIIVISGCaTGIGAATRKVLEAAGHQIVGID 32 d1l7da1 60 VRAatkeqveslggKFIT--------vkKQAEAVLKELV-KTDIAITTALIPG------- 103 ::: :::: ::::::::::: ::::::::::::: d1fjha_ 33 IRD-----------AEVIadlstaegrkQAIADVLAKCSkGMDGLVLCAGLGPqtkvlgn 81 d1l7da1 104 --kpAPVL---ITEEMVTKMKP--GSVIIDLA---------------------------- 128 :::: ::::::::::: :::::::: d1fjha_ 82 vvsvNYFGateLMDAFLPALKKghQPAAVVISsvasahlafdknplalaleageeakara 141 d1l7da1 129 ----------------vEAGGncPLSEpgkIVVK--HGVKIVG----------------- 153 :::: :::: :::: ::::::: d1fjha_ 142 ivehageqggnlayagsKNAL-tVAVR-krAAAWgeAGVRLNTiapgafvppmgrraeps 199 d1l7da1 154 --------------------HTNVPS----------r 160 :::::: d1fjha_ 200 emasviaflmspaasyvhgaQIVIDGgidavmrptqf 236 FAST alignment (Normalized score: 4.65 Raw score:903.80) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVF-GVGVAGLQAIATAKRLGAVVMATD 59 ::::::: :::::::::::::::::::::::: d1fjha_ 1 ----------------------------MSIIVISGCATGIGAATRKVLEAAGHQIVGID 32 d1l7da1 60 VRAATKEQVESLGGKFITV---------------KKQAEAVLKELV-KTDIAITTALIPG 103 : :::::::::::: ::::::::::: d1fjha_ 33 I------------------RDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGL-- 72 d1l7da1 104 KPAPVLI------------------------TEEMVTKMKPGSVIIDLAVEAGGNCPLSE 139 :::::::: ::::::: d1fjha_ 73 -------GPQTKVLGNVVSVNYFGATELMDAFLPALKKG-HQPAAVV------------- 111 d1l7da1 140 PGKI-------------------------------------------------------- 143 d1fjha_ 112 ----ISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVR 167 d1l7da1 144 -----VVKHGVKIVGHTNVPSR-------------------------------------- 160 ::::::::::: d1fjha_ 168 KRAAAWGEAGVRLNTI------APGAFVPPMGRRAEPSEMASVIAFLMSPAASYVHGAQI 221 d1l7da1 161 --------------- 161 d1fjha_ 222 VIDGGIDAVMRPTQF 236 TMalign alignment (TM-score: 0.58 Raw score:93.00) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATD 59 : :::::::: :::::::::::::::::::::: d1fjha_ 1 ---------------------------M-SIIVISGCATGIGAATRKVLEAAGHQIVGID 32 d1l7da1 60 VRAATKEQVESLGGKFITV-----K---KQAEAVLKELV-KTDIAITTALIPG------- 103 :: :: :::: : ::::::::::: ::::::::::::: d1fjha_ 33 -IR-DA---------EVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGN 81 d1l7da1 104 KP--APV-L--ITEEMVTKM-KP-GSVIIDLAV--E------------------------ 130 :: ::: : ::::::::: :: ::::::::: : d1fjha_ 82 VVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARA 141 d1l7da1 131 -----------------A-GGNCPLSEP-GKI-VVKHGVKIVG----------------- 153 : ::::: ::: :: :::::::::: d1fjha_ 142 IVEHAGEQGGNLAYAGSKNALTVA-VRKR-AAAWGEAGVRLNTIAPGAFVPPMGRRAEPS 199 d1l7da1 154 --------------------HTNVPSR---------- 160 ::::::: d1fjha_ 200 EMASVIAFLMSPAASYVHGAQIVIDGGIDAVMRPTQF 236 HHsearch alignment (Probability: 0.91 E-value:0.00) d1l7da1 31 RVLVF--GVGVAGLQAIATAKRLGAVVMATDVRAATKEQ 67 ::::: :::::::::::::::::::::::::::::::: d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA 40