Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1ja9a_ | 1,3,6,8-tetrahydroxynaphthalene reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 1.986 --> HitDALI alignment (Z-score: 8.8 Raw score:769.50) d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFGV-GVAGLQAIATAKRLGAVVMATD 59 :::: :::::::: :::::::::::::::::::::: d1ja9a_ 1 -------------skPLAG----------KVALTTGAgRGIGRGIAIELGRRGASVVVNY 37 d1l7da1 60 V-RAATKEQVESLG------GKFIT----vkKQAEAVLKELV----KTDIAITTALIPG- 103 : :::::::::::: ::::: ::::::::::: ::::::::::::: d1ja9a_ 38 GsSSKAAEEVVAELkklgaqGVAIQadiskpSEVVALFDKAVshfgGLDFVMSNSGMEVw 97 d1l7da1 104 ---------------kpAPVL---ITEEMVTKMKPGSVIIDLA----------------- 128 :::: ::::::::::::::::::: d1ja9a_ 98 cdelevtqelfdkvfnlNTRGqffVAQQGLKHCRRGGRIILTSsiaavmtgipnhalyag 157 d1l7da1 129 vEAGGncPLSEpgkiVVKH---GVKIVGHTN----------------------------- 156 :::: :::: :::: ::::::::: d1ja9a_ 158 sKAAV-eGFCR--afAVDCgakGVTVNCIAPggvktdmfdenswhyapggykgmpqekid 214 d1l7da1 157 --------------------------------------VPSR--- 160 :::: d1ja9a_ 215 eglanmnplkrigypadigravsalcqeesewingqviKLTGggi 259 FAST alignment (Normalized score: 5.33 Raw score:1084.00) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVP-----PARVLVF-GVGVAGLQAIATAKRLGAV 54 ::::::: ::::::::::::::::::: d1ja9a_ 1 ----------------------------SKPLAGKVALTTGAGRGIGRGIAIELGRRGAS 32 d1l7da1 55 VMATDV-----RAATKEQVESL--GGKFITVK--------KQAEAVLKELV------KTD 93 :::::: ::::::::::: :::: ::::::::: ::: d1ja9a_ 33 VVVNYGSSSKAAEEVVAELKKLGAQGVA----IQADISKPSEVVALFDK--AVSHFGGLD 86 d1l7da1 94 IAITTALIPGKP--------------------APVLI---TEEMVT-KMKPGSVIIDLAV 129 :::::::: :::: :::::: :::::::::: d1ja9a_ 87 FVMSNSGM----EVWCDELEVTQELFDKVFNLNTRG-QFFVAQQGLKHCRRGGRIIL--- 138 d1l7da1 130 EAGGNCPLSEPGKIVVK-------------------------------------HGVKIV 152 :::::: d1ja9a_ 139 -----------------TSSIAAVMTGIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVN 181 d1l7da1 153 GHTNVPSR---------------------------------------------------- 160 :: d1ja9a_ 182 CI------APGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRA 235 d1l7da1 161 ------------------------ 161 d1ja9a_ 236 VSALCQEESEWINGQVIKLTGGGI 259 TMalign alignment (TM-score: 0.66 Raw score:105.15) d1l7da1 1 -AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGAVVMAT 58 : ::: ::::::::: ::::::::::::::::::::: d1ja9a_ 1 S---------K-----PLA----------GKVALTTGAGRGIGRGIAIELGRRGASVVVN 36 d1l7da1 59 DVR-AATKEQVESLG------GKFITVK----KQAEAVLK-EL---VKTDIAITTALIPG 103 ::: ::::::::::: ::::::: :::::::: :: :::::::::::::: d1ja9a_ 37 YGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEV 96 d1l7da1 104 --------------KP--AP-VLIT-EEMVTKM-KPGSVIIDLAV--E------------ 130 :: :: :::: ::::::: ::::::::::: : d1ja9a_ 97 WCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPNHALYA 156 d1l7da1 131 --A-GGNCPLSEPGKIVVKH--G-VKIVG------------------------------- 153 : :: ::::: :::::: : ::::: d1ja9a_ 157 GSKAAV-EGFCR--AFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKI 213 d1l7da1 154 -------------------------------------HTNVPSR-- 160 ::::::: d1ja9a_ 214 DEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGGGI 259 HHsearch alignment (Probability: 0.96 E-value:0.00) d1l7da1 27 VPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDV-RAATK----EQVESLGGKFITV-- 78 ::::::::::: ::::::::::::::::::::::: ::::: ::::::::::::: d1ja9a_ 4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQA 63 d1l7da1 79 -KKQAEAVLKELV-------KTDIAITTALIPGK-------------------PAPVLIT 111 :::::::::::: :::::::::::::: ::::::: d1ja9a_ 64 DISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVA 123 d1l7da1 112 EEMVTKMKPGSVIIDLAVEAGG 133 :::::::::::::::::::::: d1ja9a_ 124 QQGLKHCRRGGRIILTSSIAAV 145