Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1hxha_ | 3beta/17beta hydroxysteroid dehydrogenase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 2.018 --> HitDALI alignment (Z-score: 8.8 Raw score:772.00) d1l7da1 1 agyravidgayefaRAFPmmmtaagtvpPARVLVFGV-GVAGLQAIATAKRLGAVVMATD 59 :::: ::::::::: :::::::::::::::::::::: d1hxha_ 1 -------------tNRLQ----------GKVALVTGGaSGVGLEVVKLLLGEGAKVAFSD 37 d1l7da1 60 VRAA-TKEQVESLG--GKFIT----vkKQAEAVLKELV----KTDIAITTALIPG----- 103 :::: ::::::::: ::::: ::::::::::: ::::::::::::: d1hxha_ 38 INEAaGQQLAAELGerSMFVRhdvsseADWTLVMAAVQrrlgTLNVLVNNAGILLpgdme 97 d1l7da1 104 -----------kpAPVL---ITEEMVtKMKP--GSVIIDLA----------------vEA 131 :::: :::::: :::: :::::::: :: d1hxha_ 98 tgrledfsrllkiNTESvfiGCQQGI-AAMKetGGSIINMAsvsswlpieqyagysasKA 156 d1l7da1 132 GGncPLSEpgkiVVKH-----GVKIVGHTN------------------------------ 156 :: :::: :::: ::::::::: d1hxha_ 157 AV-sALTR--aaALSCrkqgyAIRVNSIHPdgiytpmmqaslpkgvskemvlhdpklnra 213 d1l7da1 157 -----------------------------VPSR------- 160 :::: d1hxha_ 214 graymperiaqlvlflasdessvmsgselHADNsilgmgl 253 FAST alignment (Normalized score: 5.21 Raw score:1048.00) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVP-----PARVLVF-GVGVAGLQAIATAKRLGAV 54 ::::::: ::::::::::::::::::: d1hxha_ 1 ----------------------------TNRLQGKVALVTGGASGVGLEVVKLLLGEGAK 32 d1l7da1 55 VMATDVRA-ATKEQVESL--GGKFITVK--------KQAEAVLKELV------KTDIAIT 97 :::::::: ::::::::: :::: ::::::::: ::::::: d1hxha_ 33 VAFSDINEAAGQQLAAELGERSMF----VRHDVSSEADWTLVMAA--VQRRLGTLNVLVN 86 d1l7da1 98 TALIPGKPAPVLI------------------------TEEMVTKMK-------PGSVIID 126 :::: ::::::: ::::::: d1hxha_ 87 NAGI---------LLPGDMETGRLEDFSRLLKINTESVFIGCQQ--GIAAMKETGGSIIN 135 d1l7da1 127 LAVEAGGNCPLSEPGKIVVK--------------------------------------HG 148 :: d1hxha_ 136 --------------------MASVSSWLPIEQYAGYSASKAAVSALTRAAALSCRKQGYA 175 d1l7da1 149 VKIVGHTNVPSR------------------------------------------------ 160 :::::: d1hxha_ 176 IRVNSI------HPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFL 229 d1l7da1 161 ------------------------ 161 d1hxha_ 230 ASDESSVMSGSELHADNSILGMGL 253 TMalign alignment (TM-score: 0.66 Raw score:105.24) d1l7da1 1 --AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGAVVMA 57 ::: ::::::::: :::::::::::::::::::: d1hxha_ 1 TN---------------RLQ----------GKVALVTGGASGVGLEVVKLLLGEGAKVAF 35 d1l7da1 58 TDVRAA-TKEQVESLG--GKFITV---K-KQAEAVLK-EL---VKTDIAITTALIPG--- 103 :::::: ::::::::: :::::: : :::::::: :: :::::::::::::: d1hxha_ 36 SDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGD 95 d1l7da1 104 -----------KP--APVLI-T-EEMVTKMKP--GSVIIDLAV--E-------------A 131 :: ::::: : ::::::::: ::::::::: : : d1hxha_ 96 METGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASK 155 d1l7da1 132 -GGNCPLSEPGKIVVKH----G-VKIVGHTN----------------------------- 156 :: ::::: :::::: : :::::::: d1hxha_ 156 AAV-SALTR--AAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNR 212 d1l7da1 157 ------------------------------VPSR------- 160 :::: d1hxha_ 213 AGRAYMPERIAQLVLFLASDESSVMSGSELHADNSILGMGL 253 HHsearch alignment (Probability: 0.97 E-value:0.00) d1l7da1 27 VPPARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVES-LGGKFITV---KKQ 81 :::::::::: :::::::::::::::::::::::::::::::::: :::::::: ::: d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSS 63 d1l7da1 82 AEAVLKEL-------VKTDIAITTALIPGK-------------------PAPVLITEEMV 115 :::::::: ::::::::::::::: ::::::::::: d1hxha_ 64 EADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGI 123 d1l7da1 116 TKMKP-GSVIIDLAVEAG 132 ::::: :::::::::::: d1hxha_ 124 AAMKETGGSIINMASVSS 141