Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1px0a_ | Halohydrin dehalogenase HheC | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 2.096 --> HitDALI alignment (Z-score: 7.8 Raw score:694.20) d1l7da1 1 agyravidgayefarafpmmmtaagtvppARVLVFGV-GVAGLQAIATAKRLGAVVMATD 59 :::::::: :::::::::::::::::::::: d1px0a_ 1 -----------------------------STAIVTNVkHFGGMGSALRLSEAGHTVACHD 31 d1l7da1 60 VRA----ATKEQV-ESLGGKFITvkkQAEAVLKELV----KTDIAITTALIPG------- 103 ::: :::::: ::::::::: :::::::::: ::::::::::::: d1px0a_ 32 ESFkqkdELEAFAeTYPQLKPMS-eqEPAELIEAVTsaygQVDVLVSNDIFAPefqpidk 90 d1l7da1 104 ---------KPAP--VLIT--EEMVTKMK--PGSVIIDLA----------------vEAG 132 :::: :::: :::::::: ::::::::: ::: d1px0a_ 91 yavedyrgaVEALqiRPFAlvNAVASQMKkrKSGHIIFITsatpfgpwkelstytsaRAG 150 d1l7da1 133 GncPLSEpgkIVVK--HGVKIVG------------------------------------- 153 : :::: :::: ::::::: d1px0a_ 151 A-cTLAN-alSKELgeYNIPVFAigpnylhsedspyfyptepwktnpehvahvkkvtalq 208 d1l7da1 154 --------------------------HTNVPS-----------r 160 :::::: d1px0a_ 209 rlgtqkelgelvaflasgscdyltgqVFWLAGgfpmierwpgmp 252 FAST alignment (Normalized score: 4.66 Raw score:936.00) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFG-VGVAGLQAIATAKRLGAVVMATD 59 ::::::: ::::::::::::::::::::::: d1px0a_ 1 -----------------------------STAIVTNVKHFGGMGSALRLSEAGHTVACHD 31 d1l7da1 60 V---RAATKEQVES--LGGKFITVKK----QAEAVLKELV------KTDIAITTALIPGK 104 : :::::::::: ::::: :::::::: ::::::::::: d1px0a_ 32 ESFKQKDELEAFAETYPQLKP-----MSEQEPAELIEA--VTSAYGQVDVLVSNDIF--- 81 d1l7da1 105 PAPVLI--------------------------------TEEMVTKMKPGSVIIDLAVEAG 132 :::::: ::::::::: d1px0a_ 82 ------APEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMK-KRKSGHIIF------ 128 d1l7da1 133 GNCPLSEPGKIV----------------------------------VKHGVKIVGHTNVP 158 :::::::::: d1px0a_ 129 ------------ITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAI---- 172 d1l7da1 159 SR---------------------------------------------------------- 160 d1px0a_ 173 --GPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDY 230 d1l7da1 161 ---------------------- 161 d1px0a_ 231 LTGQVFWLAGGFPMIERWPGMP 252 TMalign alignment (TM-score: 0.63 Raw score:100.37) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATD 59 :::::::: :::::::::::::::::::::: d1px0a_ 1 -----------------------------STAIVTNVKHFGGMGSALRLSEAGHTVACHD 31 d1l7da1 60 VRA-A--TK-EQVESL-GGKFITVKKQAEAVLK-EL---VKTDIAITTALIPG------- 103 ::: : :: :::::: ::::::: :::::::: :: :::::::::::::: d1px0a_ 32 ESFKQKDELEAFAETYPQLKPMSE-QEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDK 90 d1l7da1 104 --------KP--AP-VL--ITEEMVTKM--KPGSVIIDLAV--E-------------A-G 132 :: :: :: ::::::::: ::::::::::: : : : d1px0a_ 91 YAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAG 150 d1l7da1 133 GNCPLSEPGKIVV-K-HG-VKIVG------------------------------------ 153 : ::::: :::: : :: ::::: d1px0a_ 151 A-CTLAN--ALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTAL 207 d1l7da1 154 ---------------------------HTNVPSR----------- 160 ::::::: d1px0a_ 208 QRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 252 HHsearch alignment (Probability: 0.96 E-value:0.00) d1l7da1 31 RVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVKKQ-AEAVLKE 88 ::::::: :::::::::::::::::::::::::::::::::::::::::::: ::::::: d1px0a_ 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAEL 61 d1l7da1 89 L-------VKTDIAITTALIPGK--------------------PAPVLITEEMVTKMK-- 119 : ::::::::::::::: ::::::::::::::: d1px0a_ 62 IEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKR 121 d1l7da1 120 PGSVIIDLAVEAG 132 ::::::::::::: d1px0a_ 122 KSGHIIFITSATP 134