Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1oaaa_ | Sepiapterin reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 2.135 --> HitDALI alignment (Z-score: 7.4 Raw score:669.60) d1l7da1 1 agyravidgayefaRAFPmmmtaagtvppARVLVFGV-GVAGLQAIATAKRLG---AVVM 56 :::: :::::::: ::::::::::::::: :::: d1oaaa_ 1 -------------aDGLG----------cAVCVLTGAsRGFGRALAPQLARLLspgSVML 37 d1l7da1 57 ATDVRAATKEQVESLG--------GKFIT----vKKQAEAVLKELV--------ktDIAI 96 :::::::::::::::: ::::: :::::::::::: :::: d1oaaa_ 38 VSARSESMLRQLKEELgaqqpdlkVVLAAadlgtEAGVQRLLSAVRelprpeglqrLLLI 97 d1l7da1 97 TTALIPG-------------------kpAPVL---ITEEMVTKMKP----GSVIIDLA-- 128 ::::::: :::: ::::::::::: :::::::: d1oaaa_ 98 NNAATLGdvskgflnvndlaevnnywalNLTSmlcLTSGTLNAFQDspglSKTVVNISsl 157 d1l7da1 129 --------------vEAGGncPLSEpgKIVV-KHGVKIVGH------------------- 154 :::: :::: :::: ::::::::: d1oaaa_ 158 calqpykgwglycagKAAR-dMLYQ--VLAAeEPSVRVLSYapgpldndmqqlaretskd 214 d1l7da1 155 ---------------------------------------TNVPSR 160 :::::: d1oaaa_ 215 pelrsklqklksdgalvdcgtsaqkllgllqkdtfqsgaHVDFYD 259 FAST alignment (Normalized score: 4.76 Raw score:968.70) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVP-----PARVLVF-GVGVAGLQAIATAKR---L 51 ::::::: ::::::::::::::: : d1oaaa_ 1 ----------------------------ADGLGCAVCVLTGASRGFGRALAPQLARLLSP 32 d1l7da1 52 GAVVMATDVRAATKEQVES--------LGGKFITV-----KKQAEAVLKELVKT------ 92 ::::::::::::::::::: ::::::: ::::::::::::: d1oaaa_ 33 GSVMLVSARSESMLRQLKEELGAQQPDLKVVLAA-ADLGTEAGVQRLLSAVRE-LPRPEG 90 d1l7da1 93 ---DIAITTALIPGKPAPVLI-------------------------------TEEMVTKM 118 ::::::::: :::::::: d1oaaa_ 91 LQRLLLINNAAT---------LGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAF 141 d1l7da1 119 K----PGSVIIDLAVEAGGNCPLSEPGKIVVK---------------------------- 146 : ::::::: d1oaaa_ 142 QDSPGLSKTVVN--------------------ISSLCALQPYKGWGLYCAGKAARDMLYQ 181 d1l7da1 147 ------HGVKIVGHTNVPSR---------------------------------------- 160 :::::::: d1oaaa_ 182 VLAAEEPSVRVLSY------APGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGT 235 d1l7da1 161 ------------------------ 161 d1oaaa_ 236 SAQKLLGLLQKDTFQSGAHVDFYD 259 TMalign alignment (TM-score: 0.62 Raw score:99.93) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGA--V-VM 56 : :::: ::::::::: :::::::::::::::: : :: d1oaaa_ 1 ----------A---DGLG----------CAVCVLTGASRGFGRALAPQLARLLSPGSVML 37 d1l7da1 57 ATDVRAATKEQVE-SLG------GKFITV------K--KQ-AEAVLKELVK----TDIAI 96 ::::::::::::: ::: :::::: : :: :::::::::: ::::: d1oaaa_ 38 VSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLI 97 d1l7da1 97 TTALIPG-----------------KP--AP-VLIT-EEM-VTKMKP----GSVIIDLAV- 129 ::::::: :: :: :::: ::: :::::: ::::::::: d1oaaa_ 98 NNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSL 157 d1l7da1 130 -E-------------A-GGNCPLSEPGKIVV-KHGVKIVGH------------------- 154 : : :: ::::: :::: ::::::::: d1oaaa_ 158 CALQPYKGWGLYCAGKAAR-DMLYQ--VLAAEEPSVRVLSYAPGPLDNDMQQLARETSKD 214 d1l7da1 155 ---------------------------------------TNVPSR 160 :::::: d1oaaa_ 215 PELRSKLQKLKSDGALVDCGTSAQKLLGLLQKDTFQSGAHVDFYD 259 HHsearch alignment (Probability: 0.94 E-value:0.00) d1l7da1 25 GTVPPARVLVFGV-GVAGLQAIATAK---RLGAVVMATDVRAATKEQVES----L--GGK 74 ::::::::::::: :::::::::::: ::::::::::::::::::::: : ::: d1oaaa_ 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLK 61 d1l7da1 75 FIT---VKKQAEAVLKELVK-----------TDIAITTALI--PGKP------------- 105 ::: :::::::::::::: :::::::::: :::: d1oaaa_ 62 VVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNN 121 d1l7da1 106 -------APVLITEEMVTKMKP----GSVIIDLAVEAG 132 ::::::::::::::: :::::::::::: d1oaaa_ 122 YWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCA 159