Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1l7da1 | Nicotinamide nucleotide transhydrogenase dI component | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
| Hit | d1jtva_ | Human estrogenic 17beta-hydroxysteroid dehydrogenase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.100 --> IntermediateDALI alignment (Z-score: 5.1 Raw score:345.40) query 1 ---------------GMEN----------KKMNLLLfsgdydkALASLIIANAAREMEIE 35 :::: ::::::: ::::::::::::::::: d1l7da1 1 agyravidgayefarAFPMmmtaagtvppARVLVFG------vGVAGLQAIATAKRLGAV 54 query 36 VTIFCafwgLLLLrdpekasqedkslyeqafssltpreaeelplskmnlggigkkmllem 95 ::::: :::: d1l7da1 55 VMATD----VRAA----------------------------------------------- 63 query 96 mkeekapklsdllSGARKKEVKFYAXQLsveimgfkkeelfpevqimDVKEYLKNALESD 155 ::::::::::::::: ::::::::::::: d1l7da1 64 -----------tkEQVESLGGKFITVKK-------------------QAEAVLKELVKTD 93 query 156 LQLFI------------------------------------------------------- 160 ::::: d1l7da1 94 IAITTalipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivg 153 query 161 ------- 161 d1l7da1 154 htnvpsr 160 FAST alignment (Normalized score: 3.90 Raw score:624.80) query 1 GME----------------------------NKKMNLLLFSGDYDK---ALASLIIANAA 29 :::::: ::::::::::: d1l7da1 1 ---AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLV---------FGVGVAGLQAIATA 48 query 30 REMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGK 89 :::::::::: d1l7da1 49 KRLGAVVMAT-------------------------------------------------- 58 query 90 KMLLEMMKEEKAPKLSD-----LLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIM-- 142 :::::::::::::: d1l7da1 59 -----------------DVRAATKEQVESLGGKFIT----------------------VK 79 query 143 -DVKEYLKNALESDLQLFI----------------------------------------- 160 :::::::::::::::: d1l7da1 80 KQAEAVLKELVKTDIAI--TTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPL 137 query 161 ----------------------- 161 d1l7da1 138 SEPGKIVVKHGVKIVGHTNVPSR 160 TMalign alignment (TM-score: 0.23 Raw score:37.44) query 1 ------------------------------GMENKKMNLLLFSGDYDKALASLIIANAAR 30 d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPA------------------------------ 30 query 31 EMEIEVTIFCAFWGLLLLRDPEK--AS--QEDKSLYEQAFSSLTPREAE----------- 75 :: ::: ::::: :: :::::: : :: :: ::: d1l7da1 31 -----------RV-LVF-GVGVAGLQAIATAKRLG-A--VV--MA-TDVRAATKEQVESL 71 query 76 ---ELPL-SK-----------------MNLGGIGKKMLLEMMKEEKAPKLSDLLSGARKK 114 :::: :: ::::::: d1l7da1 72 GGKFITVKKQAEAVLKELVKTDIAITT--------------------------ALIPGKP 105 query 115 EVKFYA---X----QLSVEIMGFKKEELFPE---V----Q----IMDVKEY--------- 147 :::::: : :::: : : :::: : : ::::::: d1l7da1 106 APVLITEEMVTKMKPGSV----I-I--DLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP 158 query 148 --LKNALESDLQLFI 160 d1l7da1 159 SR------------- 160 HHsearch alignment (Probability: 0.09 E-value:0.01) query 21 ASLIIANAAREMEIEVTIF 39 ::::::::::::::::::: d1l7da1 40 AGLQAIATAKRLGAVVMAT 58
Intermediate <-- 2.294 --> HitDALI alignment (Z-score: 7.3 Raw score:701.00) d1l7da1 1 agyravidgayefarafpmmmtaagtvPPARVLVFGV-GVAGLQAIATAKRL---GAVVM 56 :::::::::: :::::::::::::: ::::: d1jtva_ 1 ---------------------------ARTVVLITGCsSGIGLHLAVRLASDpsqSFKVY 33 d1l7da1 57 ATDVRAATKEQVESLG---------GKFIT----vkKQAEAVLKE--lvKTDIAITTALI 101 :::::::::::::::: ::::: ::::::::: ::::::::::: d1jtva_ 34 ATLRDLKTQGRLWEAAralacppgsLETLQldvrdsKSVAAARERvtegRVDVLVCNAGL 93 d1l7da1 102 PG-----------------kpAPVL--ITEEMVTKM--KPGSVIIDLA------------ 128 :: :::: ::::::::: :::::::::: d1jtva_ 94 GLlgplealgedavasvldvnVVGTvrMLQAFLPDMkrRGSGRVLVTGsvgglmglpfnd 153 d1l7da1 129 ----vEAGGncPLSEpgkIVVK--HGVKIVGHTN-------------------------- 156 :::: :::: :::: :::::::::: d1jtva_ 154 vycasKFAL-eGLCE-slAVLLlpFGVHLSLIECgpvhtgspeevldrtdihtfhrfyqy 211 d1l7da1 157 -----------------------------------VPSR--------------------- 160 :::: d1jtva_ 212 lahskqvfreaaqnpeevaevfltalrapkptlryFTTErflpllrmrlddpsgsnyvta 271 d1l7da1 161 ------- 161 d1jtva_ 272 mhrevfg 278 FAST alignment (Normalized score: 4.44 Raw score:935.90) d1l7da1 1 AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFG-VGVAGLQAIATAKR----LGAVV 55 ::::::::: ::::::::::::: ::::: d1jtva_ 1 ---------------------------ARTVVLITGCSSGIGLHLAVRLA-SDPSQSFKV 32 d1l7da1 56 MATDVR----AATKEQVESL-----GGKFITVK--------KQAEAVLKELV----KTDI 94 :::::: :::::::::: :::: ::::::::: :::: d1jtva_ 33 YATLRDLKTQGRLWEAARALACPPGSLET----LQLDVRDSKSVAAARER--VTEGRVDV 86 d1l7da1 95 AITTALIPGKPAPVLI------------------------TEEMVTK------MKPGSVI 124 ::::::: ::::::: ::::::: d1jtva_ 87 LVCNAGL---------GLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRV 137 d1l7da1 125 IDLAVEAGGNCPLSEPGKIVVK------------------------------------HG 148 :: :: d1jtva_ 138 LV--------------------TGSVGGLMGLPFNDVYCASKFALEGLCESLAVLLLPFG 177 d1l7da1 149 VKIVGHTNVPSR------------------------------------------------ 160 :::::: d1jtva_ 178 VHLSLI------ECGPVHTGSPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAE 231 d1l7da1 161 ----------------------------------------------- 161 d1jtva_ 232 VFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSGSNYVTAMHREVFG 278 TMalign alignment (TM-score: 0.47 Raw score:75.33) d1l7da1 1 ----------AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAK- 49 ::::::::::: :::::: ::::::::::::::::::::::: d1jtva_ 1 ARTVVLITGCSSGIGLHLAVR----LASDPS-----QSFKVYATLRDLKTQGRLWEAARA 51 d1l7da1 50 RLG---AVVMATDV---RAATKEQVESLGGKFITVKKQAEAVLK-E--LVKTDIAITTAL 100 ::: :::::::: ::::::::: : :::::::::::: d1jtva_ 52 LACPPGSLETLQLDVRD------------------SKSVAAARERVTEGRVDVLVCNAGL 93 d1l7da1 101 IP------G----K--PA-P--VLIT--EEMVT-KM----KPGSVIIDL-AVE------- 130 :: : : :: : :::: ::::: :: ::::::::: :: d1jtva_ 94 GLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSV-GGLMGLPFN 152 d1l7da1 131 --A--GG-NCPLSEP-GKIV-VK-------HGVKIVGHTNVP------------------ 158 : :: : ::: :: :: :::::::::::: d1jtva_ 153 DVYCASKF--A-LEGL--CESLAVLLLPFGVHLSLIECGPVHTGSPEEVLDRTDIHTFHR 207 d1l7da1 159 ---------------SR------------------------------------------- 160 :: d1jtva_ 208 FYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKPTLRYFTTERFLPLLRMRLDDPSGSN 267 d1l7da1 161 ----------- 161 d1jtva_ 268 YVTAMHREVFG 278 HHsearch alignment (Probability: 0.90 E-value:0.00) d1l7da1 31 RVLVFGVG-VAGLQAIATAKRLGA---VVMATDVRAATKEQVESL-------GGKFITVK 79 :::::::: ::::::::::::::: :::::::::::::::::: :::::::: d1jtva_ 4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQ 63 d1l7da1 80 ---KQAEAVLKELV-----KTDIAITTALIPGKP-------------------APVLITE 112 ::::::::::: ::::::::::::::: ::::::: d1jtva_ 64 LDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQ 123 d1l7da1 113 EMVTKMKP--GSVIIDLAVEAG 132 :::::::: :::::::::::: d1jtva_ 124 AFLPDMKRRGSGRVLVTGSVGG 145