Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1m6ia2 | Apoptosis-inducing factor (AIF) | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
| Hit | d1qzza2 | Aclacinomycin-10-hydroxylase RdmB | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | α/β |
Query <-- 1.321 --> IntermediateDALI alignment (Z-score: 3.4 Raw score:307.80) query 1 -------------------------------GMEN--KKMNLLLfsgdydkALASLIIAN 27 :::: ::::::: ::::::::: d1m6ia2 1 prslsaidragaevksrttlfrkigdfrsleKISRevKSITIIG------gGFLGSELAC 54 query 28 AAREME----IEVTIFCafwGLLLlrdpekasqedkslyeqafssltpreAEELPlskmn 83 :::::: ::::::: :::: ::::: d1m6ia2 55 ALGRKAralgTEVIQLF---PEKG------------------------nmGKILP----- 82 query 84 lggigkkmllemmkeekapKLSDLLSGARKKEVKFY--AXQLsveimgfkkeelfpevqi 141 ::::::::::::::::: :::: d1m6ia2 83 -----------------eyLSNWTMEKVRREGVKVMpnAIVQ-----svgvssgkllikl 120 query 142 mDVKEYlknalESDLQLF---i 160 ::::: ::::::: d1m6ia2 121 kDGRKV-----ETDHIVAavgl 137 FAST alignment (Normalized score: 3.45 Raw score:510.50) query 1 GME------------------------------------NKKMNLLLFSGDYDKALASLI 24 :::::: ::::::::::::: d1m6ia2 1 ---PRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITI--IGGGFLGSELACA 55 query 25 IANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNL 84 :::::::::::::::: d1m6ia2 56 LGRKARALGTEVIQLF-------------------------------------------- 71 query 85 GGIGKKMLLEMMKEEKAP-------------KLSDLLSGARKKEVKFYAXQLSVEIMGFK 131 ::::::::::::::::: d1m6ia2 72 ------------------PEKGNMGKILPEYLSNWTMEKVRREGVKVM------------ 101 query 132 KEELFPEVQIMDVKEYLKNA-------------------LESDLQLFI----- 160 ::::: ::::::: d1m6ia2 102 --------PNAIV-------QSVGVSSGKLLIKLKDGRKVETDHIV--AAVGL 137 TMalign alignment (TM-score: 0.37 Raw score:59.83) query 1 -------------GMENK-KMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFWGLL 46 : :::::: ::::::::::::::::::::::::::::: d1m6ia2 1 PRSLSAIDRAGAE----VKSRTTLF------RKIGDFRSLEKISREVKSITIIGGGFLGS 50 query 47 LLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEEKAPKLSD 106 ::: : : d1m6ia2 51 ELA------------------------C------------------------------A- 55 query 107 LLSGARKK-EVKFYAXQLSV--EI-M-G--FK--KEELFP--EVQIM-DVKEYLKNALE- 153 :::::::: ::::::::::: :: : : :: :::::: ::::: ::: :: ::: d1m6ia2 56 LGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIV--QS-VGVS 112 query 154 ---S------------DLQLFI--- 160 : :::::: d1m6ia2 113 SGKLLIKLKDGRKVETDHIVAAVGL 137 HHsearch alignment (Probability: 0.03 E-value:0.11) query 4 NKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIF 39 :::::::::::::::::::::::::::::::::::: d1m6ia2 35 REVKSITIIGGGFLGSELACALGRKARALGTEVIQL 70
Intermediate <-- 1.320 --> HitDALI alignment (Z-score: 3.9 Raw score:350.40) d1m6ia2 1 -----------------------------------------------prslsaidragae 13 d1qzza2 1 hpaqqrawldlngavshadlaftglldvvrtgrpayagrygrpfwedlsadvaladsfda 60 d1m6ia2 14 vksrttlfrkiGDFRSLEkiSREVKSITIIGGGflgSELACALGRKARalGTEVIQLFPE 73 ::::::: ::::::::::::: :::::::::::: :::::::::: d1qzza2 61 lmscdedlayeAPADAYD--WSAVRHVLDVGGG--nGGMLAAIALRAP--HLRGTLVELA 114 d1m6ia2 74 KGNmgkilpeylsnwtMEKV--RREG--VKVMPnAIVQSVgvssgklliklkdgrKVETD 129 ::: :::: :::: ::::: :::::: ::::: d1qzza2 115 GPA----------eraRRRFadAGLAdrVTVAE-GDFFKP--------------lPVTAD 149 d1m6ia2 130 HIVA-AVGL--------------------------------------------------- 137 :::: :::: d1qzza2 150 VVLLsFVLLnwsdedaltilrgcvralepggrllvldradrffstlldlrmltfmggrvr 209 d1m6ia2 138 ---------------------------------------- 138 d1qzza2 210 trdevvdlagsaglalasertsgsttlpfdfsileftavs 249 FAST alignment (Normalized score: 1.30 Raw score:241.00) d1m6ia2 1 PRSLSAIDRAGAEVKSRTTLFRKIGD---------------------------------- 26 d1qzza2 1 --------------------------HPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRP 34 d1m6ia2 27 ----------------------------------------------------------FR 28 :: d1qzza2 35 AYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGG 94 d1m6ia2 29 SLEKISREV--KSITIIGGGFLGSELACALGRKARALG----TEVIQLFPEKGNMGKILP 82 ::::::::: ::::::::::::::::::::: :::::: d1qzza2 95 MLAAIALRAPHLRGTLVELAGPAERARRRFAD------AGLADRVTVA------------ 136 d1m6ia2 83 EYLSNWTMEKVRREGVKVMPNAIVQ----------------------------------- 107 d1qzza2 137 -------------------------EGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRG 171 d1m6ia2 108 --SVGVSSGKLLIKLKDGRKVETDHIVAAVGL---------------------------- 137 ::::: d1qzza2 172 CVRALEP-------------------------GGRLLVLDRADRFFSTLLDLRMLTFMGG 206 d1m6ia2 138 ------------------------------------------- 138 d1qzza2 207 RVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAVS 249 TMalign alignment (TM-score: 0.42 Raw score:58.05) d1m6ia2 1 ------------------------------------------------P---------R- 2 : : d1qzza2 1 HPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDA 60 d1m6ia2 3 -S-LS---A------------------------ID-RAGAEV-----KSRTTLFRK--I- 24 : :: : :: ::::: :::::::: : d1qzza2 61 LMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGML-AAIALRAPHL-RGTLVELAGPAE 118 d1m6ia2 25 -----------------GDFR----SLEKISREVKSITIIG--GGFL--GS-ELACALGR 58 :::: ::: : :::::::: :::: :: :::::::: d1qzza2 119 RARRRFADAGLADRVTVAEGDFFKP-LPV--T-ADVVLLSFVLLNWSDEDALTILRGCVR 174 d1m6ia2 59 KARALG-TEVIQLFP--------EKGNMGK---I----LPEYLSN-WTM-EKVRRE-GVK 99 :: :: :::::::: :: : ::: :: ::: :::::: ::: d1qzza2 175 AL--EPGGRLLVLDRADRFFSTL-----LDLRMLTFMGGRV--RTRDEVVDLAGSAGLAL 225 d1m6ia2 100 VMPNAIVQS---VGVSSGKLLIKLKDGRKVE-----TDHIVAAVGL 137 ::::::::: ::: :::: d1qzza2 226 ASERTSGSTTLP-----------FDF-SILEFTAVS---------- 249 HHsearch alignment (Probability: 0.07 E-value:0.04) d1m6ia2 34 SREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE 73 ::::::::::::::::: :::::: ::::::::::::: d1qzza2 79 WSAVRHVLDVGGGNGGM--LAAIAL--RAPHLRGTLVELA 114