Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1q1ra2 | Putidaredoxin reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
| Hit | d1t43a_ | N5-glutamine methyltransferase, HemK | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | α/β |
Query <-- 1.466 --> IntermediateDALI alignment (Z-score: 4.6 Raw score:383.50) query 1 -------------------------------gMENKKMNLLLfsgdydkALASLIIANAA 29 :::::::::: ::::::::::: d1q1ra2 1 rplpvasgavgkannfrylrtledaecirrqlIADNRLVVIG------gGYIGLEVAATA 54 query 30 REMEIEVTIFCAfwgLLLLrdpekasqedkslyeqafssltpreAEELPlskmnlggigk 89 :::::::::::: :::: ::::: d1q1ra2 55 IKANMHVTLLDT---AARV------------------------lERVTA----------- 76 query 90 kmllemmkeekapklSDLLSGARKKEVKFY--AXQLsveimgfkkeelfpevqiMDVKey 147 ::::::::::::::: :::: :::: d1q1ra2 77 -----------ppvsAFYEHLHREAGVDIRtgTQVC---gfemstdqqkvtavlCEDG-- 120 query 148 LKNAleSDLQLFI-- 160 :::: ::::::: d1q1ra2 121 TRLP--ADLVIAGig 133 FAST alignment (Normalized score: 4.48 Raw score:653.70) query 1 -------------------------------GMENKKMNLLLFSGDYDK---ALASLIIA 26 ::::::::: :::::::: d1q1ra2 1 RPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVV---------IGGGYIGLEVA 51 query 27 NAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGG 86 :::::::::::::: d1q1ra2 52 ATAIKANMHVTLLD---------------------------------------------- 65 query 87 IGKKMLLEMMKEEKAP-------------KLSDLLSGARKKEVKFYAXQLSVEIMGFKKE 133 ::::::::::::::::: d1q1ra2 66 ----------------TAARVLERVTAPPVSAFYEHLHREAGVDIR-------------- 95 query 134 ELFPEVQIMDVKEYLKNA----------------------LESDLQLFI---- 160 ::::: ::::::: d1q1ra2 96 ------TGTQV-------CGFEMSTDQQKVTAVLCEDGTRLPADLVI--AGIG 133 TMalign alignment (TM-score: 0.32 Raw score:51.98) query 1 --------------------------------GMENKKMNLLLFSGDYDKALASLIIANA 28 :::::::::::: :::::::::::: d1q1ra2 1 RPLPVASGAVGKANNFRYLRTLEDAECIRRQL---IADNRLVVIGGG-YIGLEVAATAIK 56 query 29 AREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIG 88 :: ::::: ::: :: :::: : : d1q1ra2 57 AN-----MHVTL---LDT-----------------------AA----RVLE---R--V-- 74 query 89 KK--MLL--EMMKEEKAPKLSDLLSGARKKEV-KF--YA----------------XQLSV 125 :: : ::::::::::: : : : ::::: d1q1ra2 75 TAPP--VSA--------FYEHLHREAGV---DI-RTG-TQVCGFEMSTDQQKVTAVLCED 119 query 126 EIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI--- 160 : ::: :: : :::: d1q1ra2 120 G--------------TRL--PA---D-----LVIAGIG 133 HHsearch alignment (Probability: 0.05 E-value:0.02) query 20 LASLIIANAAREMEIEVTIF 39 :::::::::::::::::::: d1q1ra2 45 YIGLEVAATAIKANMHVTLL 64
Intermediate <-- 1.099 --> HitDALI alignment (Z-score: 3.7 Raw score:350.90) d1q1ra2 1 ------------------------------------------------------------ 1 d1t43a_ 1 eyqhwlreaisqlqasesprrdaeillehvtgrgrtfilafgetqltdeqcqqldalltr 60 d1q1ra2 1 -------------rplpvasgavgkannfrylRTLEDAECIRRQLI-aDNRLVVIGGGYi 46 :::::::::::::: ::::::::::: d1t43a_ 61 rrdgepiahltgvrefwslplfvspatliprpDTECLVEQALARLPeqPCRILDLGTGT- 119 d1q1ra2 47 gLEVAATAIKAN--MHVTLLDTAARVlervtappvsafyEHLH---rEAGVDIRTGTQVC 101 ::::::::::: :::::::::::: :::: ::::::::::::: d1t43a_ 120 -GAIALALASERpdCEIIAVDRMPDA---------vslaQRNAqhlaIKNIHILQSDWFS 169 d1q1ra2 102 gfemstdqqkvtavlcedgTRLPADLVIAGIG---------------------------- 133 ::::::::::::: d1t43a_ 170 -----------------alAGQQFAMIVSNPPyideqdphlqqgdvrfepltalvaadsg 212 d1q1ra2 134 ------------------------------------------------------------ 134 d1t43a_ 213 madivhiieqsrnalvsggflllehgwqqgeavrqafilagyhdvetcrdygdnervtlg 272 d1q1ra2 134 -- 134 d1t43a_ 273 ry 274 FAST alignment (Normalized score: 2.94 Raw score:561.80) d1q1ra2 1 RPLPVASGAVGKANNFRYLR---------------------------------------- 20 d1t43a_ 1 --------------------EYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILA 40 d1q1ra2 21 -----------------------------------------------------TLEDAEC 27 ::::::: d1t43a_ 41 FGETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQ 100 d1q1ra2 28 IRRQLIA----DNRLVVIGGGYIG-LEVAATAIK--ANMHVTLLDTAARVLERVTAPPVS 80 :::: :::::::::: ::::::::: :::::::::: : d1t43a_ 101 ALAR---LPEQPCRILDLGTG---TGAIALALASERPDCEIIAVDR-------------M 141 d1q1ra2 81 AFYEHLHRE-------AGVDIRTGTQVCGFEMSTDQQKVTAVLCEDG--------TRLPA 125 ::::::::: :::::: ::::: d1t43a_ 142 PDAVSLAQRNAQHLAIKNIHIL-------------------------QSDWFSALAGQQF 176 d1q1ra2 126 DLVIAGIG---------------------------------------------------- 133 :::::: d1t43a_ 177 AMIVSN--PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLL 234 d1q1ra2 134 ---------------------------------------- 134 d1t43a_ 235 LEHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 274 TMalign alignment (TM-score: 0.50 Raw score:66.80) d1q1ra2 1 ------------------------------------------------------------ 1 d1t43a_ 1 EYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTR 60 d1q1ra2 1 -------------------------------RPLPVASGAVGKANNFRYLRTLEDAECIR 29 ::::::::::: d1t43a_ 61 RRDGEPIAHLTGVREFWSLPLFVSPATLIPR------------------PDTECLVEQAL 102 d1q1ra2 30 RQLI-ADNRLVVIGGGYIGLEVAATAIK-AN-MHVTLLDTAARVLERVTAPPVSAFYEHL 86 :::: :::::::::::: ::::::::: :: ::::::::::::: : : :::: d1t43a_ 103 ARLPEQPCRILDLGTGT--GAIALALASERPDCEIIAVDRMPDAV-----S--L--AQRN 151 d1q1ra2 87 HR--EAG-VDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG---------- 133 :: ::: ::::: ::: ::::::::::::::::: d1t43a_ 152 AQHLAIKNIHILQ-SDW----------------FSALAGQQFAMIVSNPPYIDEQDPHLQ 194 d1q1ra2 134 ------------------------------------------------------------ 134 d1t43a_ 195 QGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGY 254 d1q1ra2 134 -------------------- 134 d1t43a_ 255 HDVETCRDYGDNERVTLGRY 274 HHsearch alignment (Probability: 0.04 E-value:0.04) d1q1ra2 28 IRRQLIADNRLVVIGGG--YIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEH 85 ::::::::::::::::: :::::::: :::::::::::::::::: :::: ::: d1t43a_ 102 LARLPEQPCRILDLGTGTGAIALALAS--ERPDCEIIAVDRMPDAVS-LAQR-----NAQ 153 d1q1ra2 86 LHREAGVDIRTGTQVCG 102 ::::::::::::::::: d1t43a_ 154 HLAIKNIHILQSDWFSA 170