Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
---|---|---|---|---|---|
Intermediate | d1q1ra2 | Putidaredoxin reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
Hit | d1enya_ | Enoyl-ACP reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.466 --> IntermediateDALI alignment (Z-score: 4.6 Raw score:383.50) query 1 -------------------------------gMENKKMNLLLfsgdydkALASLIIANAA 29 :::::::::: ::::::::::: d1q1ra2 1 rplpvasgavgkannfrylrtledaecirrqlIADNRLVVIG------gGYIGLEVAATA 54 query 30 REMEIEVTIFCAfwgLLLLrdpekasqedkslyeqafssltpreAEELPlskmnlggigk 89 :::::::::::: :::: ::::: d1q1ra2 55 IKANMHVTLLDT---AARV------------------------lERVTA----------- 76 query 90 kmllemmkeekapklSDLLSGARKKEVKFY--AXQLsveimgfkkeelfpevqiMDVKey 147 ::::::::::::::: :::: :::: d1q1ra2 77 -----------ppvsAFYEHLHREAGVDIRtgTQVC---gfemstdqqkvtavlCEDG-- 120 query 148 LKNAleSDLQLFI-- 160 :::: ::::::: d1q1ra2 121 TRLP--ADLVIAGig 133 FAST alignment (Normalized score: 4.48 Raw score:653.70) query 1 -------------------------------GMENKKMNLLLFSGDYDK---ALASLIIA 26 ::::::::: :::::::: d1q1ra2 1 RPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVV---------IGGGYIGLEVA 51 query 27 NAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGG 86 :::::::::::::: d1q1ra2 52 ATAIKANMHVTLLD---------------------------------------------- 65 query 87 IGKKMLLEMMKEEKAP-------------KLSDLLSGARKKEVKFYAXQLSVEIMGFKKE 133 ::::::::::::::::: d1q1ra2 66 ----------------TAARVLERVTAPPVSAFYEHLHREAGVDIR-------------- 95 query 134 ELFPEVQIMDVKEYLKNA----------------------LESDLQLFI---- 160 ::::: ::::::: d1q1ra2 96 ------TGTQV-------CGFEMSTDQQKVTAVLCEDGTRLPADLVI--AGIG 133 TMalign alignment (TM-score: 0.32 Raw score:51.98) query 1 --------------------------------GMENKKMNLLLFSGDYDKALASLIIANA 28 :::::::::::: :::::::::::: d1q1ra2 1 RPLPVASGAVGKANNFRYLRTLEDAECIRRQL---IADNRLVVIGGG-YIGLEVAATAIK 56 query 29 AREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIG 88 :: ::::: ::: :: :::: : : d1q1ra2 57 AN-----MHVTL---LDT-----------------------AA----RVLE---R--V-- 74 query 89 KK--MLL--EMMKEEKAPKLSDLLSGARKKEV-KF--YA----------------XQLSV 125 :: : ::::::::::: : : : ::::: d1q1ra2 75 TAPP--VSA--------FYEHLHREAGV---DI-RTG-TQVCGFEMSTDQQKVTAVLCED 119 query 126 EIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI--- 160 : ::: :: : :::: d1q1ra2 120 G--------------TRL--PA---D-----LVIAGIG 133 HHsearch alignment (Probability: 0.05 E-value:0.02) query 20 LASLIIANAAREMEIEVTIF 39 :::::::::::::::::::: d1q1ra2 45 YIGLEVAATAIKANMHVTLL 64
Intermediate <-- 1.161 --> HitDALI alignment (Z-score: 3.2 Raw score:364.00) d1q1ra2 1 rplpvasgavgkannfrylrtledaecirrqlIADNRLVVIGGG---YIGLEVAATAIKA 57 :::::::::::: ::::::::::::: d1enya_ 1 -----------------------------aglLDGKRILVSGIItdsSIAFHIARVAQEQ 31 d1q1ra2 58 NMHVTLLDTAARvlervtappVSAFYEHLHrEAGVDIRTgTQVCgfemstdqqkvtavlC 117 :::::::::::: ::::::::: :::::::: :::: : d1enya_ 32 GAQLVLTGFDRL--------rLIQRITDRL-PAKAPLLE-LDVQ------------neeH 69 d1q1ra2 118 EDGTR----------lPADLVIAGIG---------------------------------- 133 ::::: :::::::::: d1enya_ 70 LASLAgrvteaigagnKLDGVVHSIGfmpqtgmginpffdapyadvskgihisaysyasm 129 d1q1ra2 134 ------------------------------------------------------------ 134 d1enya_ 130 akallpimnpggsivgmdfdpsrampaynwmtvaksalesvnrfvareagkygvrsnlva 189 d1q1ra2 134 ------------------------------------------------------------ 134 d1enya_ 190 agpirtlamsaivggalgeeagaqiqlleegwdqrapigwnmkdatpvaktvcallsdwl 249 d1q1ra2 134 ------------------- 134 d1enya_ 250 pattgdiiyadggahtqll 268 FAST alignment (Normalized score: 2.93 Raw score:553.50) d1q1ra2 1 RPLPVASGAVGKANNFRYLRTLEDAECIRRQL---IADNRLVVIGGG---YIGLEVAATA 54 :::::::::::: :::::::::: d1enya_ 1 --------------------------------AGLLDGKRILVSGIITDSSIAFHIARVA 28 d1q1ra2 55 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHRE--AGVDIRTGTQVCGFEMSTDQQKV 112 ::::::::::::: ::::::::::: :::::: d1enya_ 29 QEQGAQLVLTGFD--------RLRLIQRITDR---LPAKAPLL----------------- 60 d1q1ra2 113 TAVLCEDGTR------------------------LPADLVIAGIG--------------- 133 ::::::::: d1enya_ 61 ----------ELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHS--IGFMPQTGMGINPFF 108 d1q1ra2 134 ------------------------------------------------------------ 134 d1enya_ 109 DAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTVAKSALE 168 d1q1ra2 134 ------------------------------------------------------------ 134 d1enya_ 169 SVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIG 228 d1q1ra2 134 ---------------------------------------- 134 d1enya_ 229 WNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHTQLL 268 TMalign alignment (TM-score: 0.50 Raw score:66.72) d1q1ra2 1 ------------RPLP--V--A-----------------------S--GAV-G--KANNF 16 :::: : : : ::: : ::::: d1enya_ 1 AGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLL 60 d1q1ra2 17 RYLR-TLEDA-ECIR-RQL------IADNRLVVIG------------------------- 42 :::: ::::: : :: ::: :::::::::: d1enya_ 61 ELDVQNEEHLAS-LAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGI 119 d1q1ra2 43 --GGYIGLEVAATAIKANM--HVTLLDTAAR---------VLERVTAPPVSAFYEHLHRE 89 ::::::::::::::::: :::::::::: ::::: : ::::::::::: d1enya_ 120 HISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNW-MTVAK-S-ALESVNRFVAR 176 d1q1ra2 90 -A----GVDIRTGTQ-VC----------------------------------------GF 103 : ::::::::: :: d1enya_ 177 EAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDA-- 234 d1q1ra2 104 EMSTDQQKVTAVLCEDGTRL--PA----------------------DLVIAGIG 133 :::::::: :: d1enya_ 235 ------------TPVAKTVCALLSDWLPATTGDIIYADGGAHTQLL-------- 268 HHsearch alignment (Probability: 0.93 E-value:0.00) d1q1ra2 33 IADNRLVVIGGG---YIGLEVAATAIKANMHVTLLDTAARVL 71 :::::::::::: ::::::::::::::::::::::::::: d1enya_ 4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL 45